| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1955 |
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| Symbol | |
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| ID | 4252528 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 2331757 |
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| End bp | 2333685 |
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| Gene Length | 1929 bp |
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| Protein Length | 642 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638118567 |
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| Product | threonyl-tRNA synthetase |
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| Protein accession | YP_734085 |
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| Protein GI | 113970292 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0441] Threonyl-tRNA synthetase |
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| TIGRFAM ID | [TIGR00418] threonyl-tRNA synthetase |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0000861339 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.340559 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTGTAA TTACACTTCC TGATGGTAGC AAACGCGAGT TTGCACATCC CGTATCGACT
CTCGATGTTG CCGCTGATAT CGGCCCTGGT CTAGCTAAAG CCTGTATCGC TGGTCGCGTG
AATGGCGAAC TAAAAGACGC TTGCGATCTG ATCGAAACCG ATGCTGAACT TTCTATTATT
ACCGCTAAAG ACGAAGAAGG TATTGAAATC CTTCGCCATT CTTGCGCGCA TTTATTAGGC
CATGCAATCA AGCAATTATG GCCACAAACC AAGATGGCGA TCGGTCCCGT GATCGATAAC
GGCTTCTACT ACGACATCGA TCTTGAGCAC AAGCTGACTC AAGAAGATAT CGAAGCCCTC
GAAAAACGTA TGCTTGAACT GGCGAAAACC AATTACGACG TAGTGAAACG CGTTGTGAGC
TGGCAAGAAG CCCGTGATAC CTTCGCCGCC CGCGGTGAAG AATACAAGAT CGCGATTCTG
GATGAGAACA TCAGCAAAGA TGCGACTCCA GCGCTCTATC ATCACGAAGA ATACACCGAC
ATGTGCCGTG GTCCACACGT GCCAAACATG CGTTTCTGCC ACCATTTCAA GTTGATGAGC
ATTGCTGGCG CTTATTGGCG TGGTAACTCT GAAAACAAGA TGCTGCAACG TATTTACGGT
ACAGCATGGG CTGATAAAAA AGCCCTGAGC ACCCATTTAG CCCGTCTTGA AGAAGCGGCT
AAACGTGACC ACCGTAAAAT TGGTAAGCAG CTTGACCTCT ACCATATGCA AGAAGAAGCA
CCAGGCATGG TGTTCTGGCA TAACGATGGT TGGAGCATCT TCCTTGAATT AGAACGTTTC
ATTCGCCGTA AGTTAAATCA ATACACTTAC CAAGAAGTAA AAGGTCCATT GATGATGGAC
CGCGTACTGT GGGAACGTTC TGGTCACTGG GATAAATACT CAGAAGCCAT GTTCACAACC
AGCAGTGAAA ACCGTGAATA CGCGGTTAAG CCAATGAACT GCCCAGGCCA CGTACAGATC
TTCAACCAAG GCTTGAAATC TTACCGTGAT CTGCCATTGC GTATGGCGGA GTTTGGTTGC
TGTCACCGCA ATGAGCCCTC AGGTTCGCTG CACGGACTCA TGCGCGTACG TGGTTTTACT
CAAGACGATG CCCATATCTT CTGTACTGAA GATCAAGTTC AAGCAGAAGT GAGCTCTTGT
ATCCAAATGG TATACGACAC TTACTCGACA TTTGGCTTTG AAAACATCGT TGTAAAACTG
TCGACTCGCC CAGAAAAACG TATCGGTGAC GATGCCATGT GGGACAGAGC CGAAGAAGCA
CTCAAGCAAG CCTTACGTGC GAACAACATC GAGTTCACCA TTTTACCGGG TGAAGGCGCC
TTCTACGGTC CTAAGATTGA GTTCACGTTG CACGACTGTT TAGACCGTGC ATGGCAGTGC
GGTACTGTGC AATTAGACTA CGCATTACCG AGCCGTTTAG GGGCAACTTA CGTTGCCGAA
GATAACAGCC GTCAAACACC TGTGATGATC CATCGTGCGA TTTTAGGCTC GTTGGAACGT
TTCTTAGGTA TTTTGATTGA AGAATACGCT GGTCGCTTCC CAACTTGGTT GGCCCCAATG
CAAGTTGTCG TGATGAATAT CACCGACAAA CAGGCTGATT ATGTTGAAGA AGTGGTCAAA
TTCTTCAAAG AACAAGGTAT TCGTGCCTCA TTTGACTTGA GGAATGAGAA AATAGGCTTT
AAAATACGCG AGCACACCTT AAGGCGTGTT CCTTATTTAT TGGTCGTTGG CGATCAGGAA
ATGGAAAATA AGGAAGTTGC GGTGCGTACA CGTGATGGAG TCGATTTAGG TAAGATGCGA
ATCGAAGATT TCGCCGCCAA GATCCATCAA CAAATTTCGC TCCGTAGTCT CAAATTGTTG
GAGGAATAG
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| Protein sequence | MPVITLPDGS KREFAHPVST LDVAADIGPG LAKACIAGRV NGELKDACDL IETDAELSII
TAKDEEGIEI LRHSCAHLLG HAIKQLWPQT KMAIGPVIDN GFYYDIDLEH KLTQEDIEAL
EKRMLELAKT NYDVVKRVVS WQEARDTFAA RGEEYKIAIL DENISKDATP ALYHHEEYTD
MCRGPHVPNM RFCHHFKLMS IAGAYWRGNS ENKMLQRIYG TAWADKKALS THLARLEEAA
KRDHRKIGKQ LDLYHMQEEA PGMVFWHNDG WSIFLELERF IRRKLNQYTY QEVKGPLMMD
RVLWERSGHW DKYSEAMFTT SSENREYAVK PMNCPGHVQI FNQGLKSYRD LPLRMAEFGC
CHRNEPSGSL HGLMRVRGFT QDDAHIFCTE DQVQAEVSSC IQMVYDTYST FGFENIVVKL
STRPEKRIGD DAMWDRAEEA LKQALRANNI EFTILPGEGA FYGPKIEFTL HDCLDRAWQC
GTVQLDYALP SRLGATYVAE DNSRQTPVMI HRAILGSLER FLGILIEEYA GRFPTWLAPM
QVVVMNITDK QADYVEEVVK FFKEQGIRAS FDLRNEKIGF KIREHTLRRV PYLLVVGDQE
MENKEVAVRT RDGVDLGKMR IEDFAAKIHQ QISLRSLKLL EE
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