| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1582 |
|---|
| Symbol | |
|---|
| ID | 4252159 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 1866277 |
|---|
| End bp | 1867590 |
|---|
| Gene Length | 1314 bp |
|---|
| Protein Length | 437 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 638118195 |
|---|
| Product | sodium:dicarboxylate symporter |
|---|
| Protein accession | YP_733716 |
|---|
| Protein GI | 113969923 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1301] Na+/H+-dicarboxylate symporters |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.147509 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAACCT TATTAAAAAA GAAATTCGGC CTTACAAGTA AAATTCTGTT CGGTATGGGA
ACAGGTATTG TTTTAGGTCT CATACTCCGC AATGCCTTTC CAGAAAGCGA TATCGTAAAA
GACTACATTA CAGAAGGTTT CTTACATGTT ATCGGCACCA TTTTTATCTC AAGTTTGAAA
ATGTTAGTGG TTCCACTGGT ATTTATTTCA TTAGTTTGTG GTACTTGCTC ACTGAGTGAA
CCTTCAAAAT TAGGCCGTTT AGGTGGCAAA ACCTTAGCCT TCTATTTATT TACCACCGCT
ATTGCTCTTG TGGTCGCGAT TATCAGTGCC GTCCTTATAC ACCCAGGTAA CGCTTCACTC
GCTTCAGAAA AAATGGAGTA CGTCGCCAAA GAAGCACCCA GTCTTTCAAG TGTACTAATC
AATATAGTGC CAACGAATCC GATGCAAGCA ATGAGCGAAG GAAATATGCT GCAAATAATT
ATTTTTGCAG TAATTTTTGG CTTTGCTATT GCCCATATTG GTGAGCGAGG AAAACGTGTT
GCCGCTTTAT TTGAAGATTT AAATGAAGTC ATTATGCGAG TCGTTACCTT GATCATGCAG
CTTGCGCCTT ATGGGGTGTT TGCGCTAATG GCAAAACTGG CATTAACGCT AGGCTTAGGA
ACATTTGAGA GTGTGGTCAA ATATTTCTTC GTGGTTCTTG GTGTACTACT GCTCCATGCG
TTTATCGTCT ATCCGACCCT GCTTAAGTTA TTCTCAGGCT TAAATCCGCT GATCTTTATT
CGTAAGATGC GCGATGTGCA GTTGTTTGCC TTCTCAACGG CAAGCTCTAA CGCTACCTTA
CCTATTACGA TTGAAGCCTC AGAGCACAGA CTCGGTGTTG ATAACAAAAT TGCCTCTTTC
ACCCTCCCCT TAGGCGCGAC CATTAACATG GATGGCACGG CGATTATGCA AGGTGTAGCT
ACCGTATTTA TCGCCCAAGT CTTTGGTATT GAGTTGACCC TGACCGATTA TGCTGCAGTC
GTTGTCACCG CCACTTTGGC CTCAATTGGT ACAGCTGGCG TGCCGGGTGT TGGGTTAATT
ATGCTCGCGA TGGTGCTTAA CCAAGTCGGC CTCCCCGTTG AAGGTATTGC CTTAATTATT
GGTGTTGACC GACTATTAGA TATGGTGCGT ACCGCCGTTA ACGTGACGGG CGATTGCGTC
GCAACTGTGG TGATTGCTAA ATCTGAAGGC GAATTTAACG AAGCGGTATT CAACAATACC
CAAGCGGGAA AAGTTGCCCC TAGCTTCGAT GAACAAGTGC ATAAAGTGGA GTAA
|
|---|
| Protein sequence | MATLLKKKFG LTSKILFGMG TGIVLGLILR NAFPESDIVK DYITEGFLHV IGTIFISSLK
MLVVPLVFIS LVCGTCSLSE PSKLGRLGGK TLAFYLFTTA IALVVAIISA VLIHPGNASL
ASEKMEYVAK EAPSLSSVLI NIVPTNPMQA MSEGNMLQII IFAVIFGFAI AHIGERGKRV
AALFEDLNEV IMRVVTLIMQ LAPYGVFALM AKLALTLGLG TFESVVKYFF VVLGVLLLHA
FIVYPTLLKL FSGLNPLIFI RKMRDVQLFA FSTASSNATL PITIEASEHR LGVDNKIASF
TLPLGATINM DGTAIMQGVA TVFIAQVFGI ELTLTDYAAV VVTATLASIG TAGVPGVGLI
MLAMVLNQVG LPVEGIALII GVDRLLDMVR TAVNVTGDCV ATVVIAKSEG EFNEAVFNNT
QAGKVAPSFD EQVHKVE
|
|---|
| |