Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_1103 |
Symbol | |
ID | 4251071 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 1293319 |
End bp | 1294194 |
Gene Length | 876 bp |
Protein Length | 291 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 638117676 |
Product | UspA domain-containing protein |
Protein accession | YP_733240 |
Protein GI | 113969447 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0589] Universal stress protein UspA and related nucleotide-binding proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.384617 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.477468 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCTTTCC AGCATATTCT CGCTGCGGTT GATGATTCCG TTCCACCTAA TGCCGTGCTC AAAAAGTCCG TTGTCTTGGC AAGAAAATGC CAAGCATCTT TGACTGTTCT CAAGGTCAAA CGAACTCATA ACTTTAATCT AAACCTTTTA TTTCATAGAG ATAAATCCAA CCTCATGTCC GATGACAGGC GAAAGCCCAT CTTGGCTTAT CCCGATAAAC AATATCCAAT CCAAATAAAA GAATGCTTAT CCCACTCAAT ACACAATGCT ATTGTCAATG AATGTAACCA GTCAGATTAT GATCTCATCA TAGTGAGTCA TAAATTCTAT CCACCCTTTT TCAATGAATT TTTAATTGCA GATGAATGGC AATTGTTACG ATTACCCCAT ATTCCCGTGA TGTTTGTAGA TCTTGAAGAT TGGCATGAGA ACGGCCACGT ACTCACAGCA CTAGAACTCG ACAATGAAAA CATCACTCAT CTTGAGTTTA ATGAAACCCT GATAGAAGAA AGCAAACGGA TTGCCAGCCT GCTCTCGAAC GATCTGCACT TAATTAATAG CTATTTACCC GATCCCTTCT ATATGAGCTT TAATCATCAG CCGCAAGAGC AAGTCTCCGA GCGAGAAAAA TATAAGGCGA GACTTACGAC GGTAGCGCGA CAGCACAATC TCAATACACA TAATCTACAC ATCGAAGAAG GCTTACCCGA AGATACGATT TCCAATGAGG CCCGTAGACT CAACGTCAAT ATGCTGGTGA TGGGCAGCGC CGAACGCAAA GGCATGTTGA GCGCATTCAA AGGCAATGCG GCGCGAAATA TTATTAACAA GCTACGAACC GATCTCTTTA TTGTCAAACC GCGACATCCG CACTAA
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Protein sequence | MPFQHILAAV DDSVPPNAVL KKSVVLARKC QASLTVLKVK RTHNFNLNLL FHRDKSNLMS DDRRKPILAY PDKQYPIQIK ECLSHSIHNA IVNECNQSDY DLIIVSHKFY PPFFNEFLIA DEWQLLRLPH IPVMFVDLED WHENGHVLTA LELDNENITH LEFNETLIEE SKRIASLLSN DLHLINSYLP DPFYMSFNHQ PQEQVSEREK YKARLTTVAR QHNLNTHNLH IEEGLPEDTI SNEARRLNVN MLVMGSAERK GMLSAFKGNA ARNIINKLRT DLFIVKPRHP H
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