Gene Shewmr4_0065 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_0065 
Symbol 
ID4250944 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp75909 
End bp77129 
Gene Length1221 bp 
Protein Length406 aa 
Translation table11 
GC content47% 
IMG OID638116607 
Productmajor facilitator transporter 
Protein accessionYP_732203 
Protein GI113968410 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0738] Fucose permease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.596651 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value7.29069e-08 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGGTAAGTG ATTCAAATTC TGCAGAAAAT CGCCATCACA CTCGAATTAG AGTGTTGACG 
TATTTAATGT TTTTTATGTT CGCTATGACC TCAGATGCCG TGGGCGTGAT CATTCCTCAG
CTCATTTCTG AGTTTGGCCT CTCTTTATCA CAGGCGAGCG CCTTTCATTA TATGCCGATG
ATTTTTATTG CAATAAGTGG TCTATTCCTC GGTTTTTTGG CGGATAAAAT AGGGCGTAAA
CTAACCATTT TATTAGGGCT GTTGTTGTTC GCCATTGCCT GTTTTTTATT TGCGCTTGGG
GAGTCGTTTT ATTATTTCCT GCTGCTATTG GCCTTGGTGG GCTTGGCAAT AGGGGTATTT
AAAACCGGGG CCTTAGCCCT GATCGGTGAT ATTTCTCGGT CGACAAAACA GCATTCCAGC
ACCATGAATA CGGTCGAAGG ATTTTTTGGG GTCGGCGCCA TGGTGGGGCC AGCCATTGTC
AGCTATCTGC TTATCAGTGG TGTGTCATGG AAGTATTTGT ATTTTGGGGC GGGTGTGTTT
TGTCTGCTGC TCTGTTGGTT AGCATTTAGG GCCGATTATC CGCAGGTTAA GCGATCTTCA
ACGGAAACAA TTAATCTGAC GAATACCTTC AGTATGATGA AAAATCCTTA TGCATTAGGT
TTTTCCCTTG CTATTGGTTT GTATGTGGCC ACCGAAGTGG CGATTTATGT ATGGATGCCT
AGCTTGCTGC AAGAGTATCA GGGGGATTAC ACAGTACTTG CGGCCTATGC CTTGACCATC
TTTTTTACCC TGCGAGCGGG TGGACGGTTT TTGGGAGGGT GGATACTAAA TCACTTTTCG
TGGCAACAGG TTATGTTCTG GTTTAGCTTA GCGATCAGCA TTTGCTACCT CGGCTCTATG
CTCTATGGCG TTGAGGCCGC AGTTATTCTC TTGCCCCTCT CTGGGCTGTT TATGTCAATG
ATGTATCCCA CTTTAAACTC CAAGGGGATC AGTTGTTTCC CCGTGGCACA GCACGGCTCT
GTGGCTGGAG TTATCCTGTT TTTTACCGCG GTTTCTGCGG CGTTGGCTCC CCTGTGCATG
GGGTTAGTTG GGGATATTTT CGGCCATGTG AAGTATGGCT TTTACCTCGC AACCGGGTTT
GCCGTTTTGT TGTGCCTGTT AGCGGGGGTT AATCTGATTA AAGATCCTTC TCAAGCTCTG
TTAAGCCGTG AAACCGCTTG A
 
Protein sequence
MVSDSNSAEN RHHTRIRVLT YLMFFMFAMT SDAVGVIIPQ LISEFGLSLS QASAFHYMPM 
IFIAISGLFL GFLADKIGRK LTILLGLLLF AIACFLFALG ESFYYFLLLL ALVGLAIGVF
KTGALALIGD ISRSTKQHSS TMNTVEGFFG VGAMVGPAIV SYLLISGVSW KYLYFGAGVF
CLLLCWLAFR ADYPQVKRSS TETINLTNTF SMMKNPYALG FSLAIGLYVA TEVAIYVWMP
SLLQEYQGDY TVLAAYALTI FFTLRAGGRF LGGWILNHFS WQQVMFWFSL AISICYLGSM
LYGVEAAVIL LPLSGLFMSM MYPTLNSKGI SCFPVAQHGS VAGVILFFTA VSAALAPLCM
GLVGDIFGHV KYGFYLATGF AVLLCLLAGV NLIKDPSQAL LSRETA