Gene Shewmr4_0014 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_0014 
Symbol 
ID4250613 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp17258 
End bp18451 
Gene Length1194 bp 
Protein Length397 aa 
Translation table11 
GC content45% 
IMG OID638116553 
Productdiguanylate cyclase 
Protein accessionYP_732153 
Protein GI113968360 
COG category[T] Signal transduction mechanisms 
COG ID[COG2199] FOG: GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value3.17011e-05 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCTGCAAA CGGATCAAAC GCTTTTTGAA CAAATGCGGA TCACTGAGCT TGAGATTGAT 
TTTCGCAAAT CCTTGTTCTC TTTTACCTTG GCGGATGTCA GAGCGCTTCA ATCCTTCAAG
CCTGTGATTG AAGCGAACAT AGACAAAATC GTTGATGACT TCTATGGCCT GCAAACCAGT
GTATCTGAAA TTGCGTTGTT GATTGGTGAC TCCGACACTC TGGCTCGTTT GCGTACCGCT
CAGAGACGCT ATGTGCTTGA CCTGTTTAAT GGTGTGTACG ATTTAGAATA TGTAAACAAC
CGCCTAAGGA TTGGCTTAGT GCACAAACGT ATCGGCGTCG AACCCAAACT CTACCTCTCT
GCCGTTCATA CCCTAAAAGA ACTGATTTAT GCGGAGATTA ACAACTCGGT TAAAGACGCC
GCTCAAAATG AACGCATTAG AATCGCCATC GACAAGCTAG TGCTTTTCGA TGTTACCTTA
GTGTTTGATA CATATATTCG CAGCTTGGTT TCTGAAATTG AGAACGCCAA AGACAAGGCG
GAACGTTACG CTCAAAGTAT GGAGAGCAAA GTCAAAGAGC GTACTCAACA ACTCGAAGAG
TTATCTCAAA CAGATCCATT AACCGGCTTA CTAAACGTGC GTCACTTGCA GGAATTTGCC
ACTCGCATCC TAAGAGCCGC GCAAAGACGT GCCGAACCCG TAAGCGTTAT TTATCTCGAT
GTGGATGACT TCAAACACTT TAATGATAGC CAAGGCCATA GAGCGGGAGA TGAAGTACTC
AGAGCCGTCG CTCAATCAAT AAAGGAAAGT ACCCGAGCGG AAGACCATTG TTTTCGCTAT
GGTGGTGATG AGTTTTGTAT CATCATGCCC AACTGCCGTG AGGAACAAGC CAGAGATCAT
TTTATCGAAC GCTTTAACCA GAATATCAAG CGCCATCTGA ATAACATCTC ATTAAGCTTT
GGCATCGTGG ATACTGGCCC CTACGACTAC GATGATGCCA ATACCCTAAT CCATAAAGCC
GATCAAAAAA TGTATAGCTA CAAACGCGCA CGAGCAGCTA AATCACAGTT ACCAGCGACG
GCAGCCAATG ATTTAAAAAC CGAGATGAGC AACATAGAGA CTCTAAACCT CGACGCAGCA
GAGTTCTGCC CCCATGAATC AGCTTCGCCA ATCATAGATA AAATCGCCGA ATAA
 
Protein sequence
MLQTDQTLFE QMRITELEID FRKSLFSFTL ADVRALQSFK PVIEANIDKI VDDFYGLQTS 
VSEIALLIGD SDTLARLRTA QRRYVLDLFN GVYDLEYVNN RLRIGLVHKR IGVEPKLYLS
AVHTLKELIY AEINNSVKDA AQNERIRIAI DKLVLFDVTL VFDTYIRSLV SEIENAKDKA
ERYAQSMESK VKERTQQLEE LSQTDPLTGL LNVRHLQEFA TRILRAAQRR AEPVSVIYLD
VDDFKHFNDS QGHRAGDEVL RAVAQSIKES TRAEDHCFRY GGDEFCIIMP NCREEQARDH
FIERFNQNIK RHLNNISLSF GIVDTGPYDY DDANTLIHKA DQKMYSYKRA RAAKSQLPAT
AANDLKTEMS NIETLNLDAA EFCPHESASP IIDKIAE