Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPR_1574 |
Symbol | |
ID | 4206383 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens SM101 |
Kingdom | Bacteria |
Replicon accession | NC_008262 |
Strand | - |
Start bp | 1764529 |
End bp | 1766226 |
Gene Length | 1698 bp |
Protein Length | 565 aa |
Translation table | 11 |
GC content | 30% |
IMG OID | 642566125 |
Product | major facilitator transporter |
Protein accession | YP_698890 |
Protein GI | 110803512 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.000345614 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAAGAAAA AATCAGTTGG AATTACAATG GCTGTCTTCT TGTTAGGAAT CTTCATGGGT GCTATTGACT CTGGTATAGT TTCACCAGCA AGAGATATAA TAGCTAATGG ATTAAAAGTT TCACAAAATG CTAGTGTCTG GGTTGTAACA ATATATACCT TAGCATATGC AGTATCAATG CCTCTTATAG GAAAACTTTC TGATAAATAT GGTAGAAAAA AAATTTACAT GGTTTCAATA ACTCTATTTG GACTAGGTTC TTTACTATGT GGAATATCAG ATTATGTAAA TAGTTATACA TTCTTATTAT TTTCAAGAGT TATAGAAGCA GTAGGTGGCG GAGGTATAAT GCCAATAGCT ACAGCGTACA TAGGAACATC ATTCCCAGTT GAAAAAAGAG GTTCAGCGCT AGGAATGATT GGAGGGGTAT ATGGAATAGC AACAGTTGTA GGACCAACCT TAGGTTCAGG AATACTTTCT ATCTTTGGAG ATAAAAACTG GGGATTTTTA TTCTTAGTAA ATGTTCCAAT CAGTATAATA ATATTACTTA TGGCAACTAA ATTAGAAGAA AATACTTCTG CACAAGGAAT TAAGAAATTA GATGTTTGTG GTTCAGGAGT ATTAACAATA TTAATTTTAT CTTTAATGTA TGGAGCTACA AACTTAAAAT TCTATGATTT TGCTAATTCA ATAAAATCAC TAGATGTTTG GCCATATCTT TTAATATTTA TAATATCAAT TCCAATATTA GTTTTGGTGG AAAAGAAAGC AGAAGATCCA GTAATAAACT TATCTTACTT TACTAATAAG GAAATAGCTA TAACTTTAAT ATTAAGTTTT GTTGTAGGTT GTGGATTAAT GGCAACAGTA TTTATTCCTC AATTTAGTGA AAATATATTA AGAACACCAA TGGGTAGTGG TGGATATATA GTTACAATAT TTGCAATATT TGTAGGTATA GCAGCACCTT TAGGTGGAAA ATTCATAGAT AAAATAGGAG TTAAAAAAGT ACTATTAATA GGTATGTCTT TAGTTATAAT AGGTAACCTT TATCAAGGAT ACGTAACAAC TAAACACCCA GGTATGGTTA ACTTAATAAT AGGTTTAGCT ATTATGGGAT TTGGCTTAGG ATTCTCTATG GGAACACCAA TAAATTACTT AATGCTTAGT TTAGTACCAG ATAATGAGGC TACAGTTGGA CAATCAGCAG TATCATTAAT TAAATCCATA GGTATTGCAG TATCACCAAA TATTCTTATT AACTTTATAT CAGATGCAGG TAGAAGAGTA CCAGGAGCAT TACAAAAAGT TATGCCACAT ATAGATGGAA TGTCTAATAT TATGTCAAAT AGTGGTGGTG CTTCAAATTT TAATAATTCA ATGGCAAATG CCAGTGTTAC TAATATATTT AGTCTTATAA AAGAAATGGT ACAATCACAA TTTGCAGCTT TAGGAGATAA GTTTTCAAAT AATCCTCATA TGAATATTGG TATGATTGAA AAATCATATA TGCAAAGTTT AGATGGAGCT AAAGGTGCAA TAGAAACAGC CTTCCAAAAA ACTATGAATA CAGGGTACAC TAAATTATTC GTAACATGTG CTATTATAGC TTTAATAGGG CTAATATTAA CAGCTATGTT AAATAATAAT TTAATAACAA TGAAAAATAG AAGATTAGAA AAGAAGGAAA AAAACTAA
|
Protein sequence | MKKKSVGITM AVFLLGIFMG AIDSGIVSPA RDIIANGLKV SQNASVWVVT IYTLAYAVSM PLIGKLSDKY GRKKIYMVSI TLFGLGSLLC GISDYVNSYT FLLFSRVIEA VGGGGIMPIA TAYIGTSFPV EKRGSALGMI GGVYGIATVV GPTLGSGILS IFGDKNWGFL FLVNVPISII ILLMATKLEE NTSAQGIKKL DVCGSGVLTI LILSLMYGAT NLKFYDFANS IKSLDVWPYL LIFIISIPIL VLVEKKAEDP VINLSYFTNK EIAITLILSF VVGCGLMATV FIPQFSENIL RTPMGSGGYI VTIFAIFVGI AAPLGGKFID KIGVKKVLLI GMSLVIIGNL YQGYVTTKHP GMVNLIIGLA IMGFGLGFSM GTPINYLMLS LVPDNEATVG QSAVSLIKSI GIAVSPNILI NFISDAGRRV PGALQKVMPH IDGMSNIMSN SGGASNFNNS MANASVTNIF SLIKEMVQSQ FAALGDKFSN NPHMNIGMIE KSYMQSLDGA KGAIETAFQK TMNTGYTKLF VTCAIIALIG LILTAMLNNN LITMKNRRLE KKEKN
|
| |