Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPR_1456 |
Symbol | |
ID | 4204439 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens SM101 |
Kingdom | Bacteria |
Replicon accession | NC_008262 |
Strand | + |
Start bp | 1637030 |
End bp | 1637746 |
Gene Length | 717 bp |
Protein Length | 238 aa |
Translation table | 11 |
GC content | 29% |
IMG OID | 642566010 |
Product | polysaccharide deacetylase family protein |
Protein accession | YP_698775 |
Protein GI | 110802384 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.0998463 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAAAAAAT TTGTTTTTTT ACTAATTACA TTAATATTTT CTTTTTCAGC CTTAGCTACC TCTTCAAAAC CTATTAAAGC AGCTGAGTTA GAAGAAAGCA CAAAAAAAAT ATTTTTAACC TTTGATGATG GCCCTGGTGG TAAGGTTACA GAAGAAATTT TAAACACCCT TAAAGAAAAT GATGTAAAAG CTACATTTTT TTTAATAGGA GAACTAGTAG AAAAACACCC TGATTTAGTT AAGAGAATAA ATGATGAGGG TCATTCCATA GGAGTACATA CCTTTACCCA TGAGAGAAAT AAAATTTACA GAAATGACTC TTCATTCCTA GAAGAAAACT TAAAAACTCA AGGATCCATA GAAAAAGTTA TTGGAAAGAA AGTATTTTCT CTTAGATTTC CATTTGGCTC TAATAATAGC ACGTATACCT TAAAAAAATC CTTAGTAGAC TCCTTACATG AACAAGGCTT TAGAATATAT GATTGGACAG TAGATAGTAC TGATGCCCTT AATCCAAACC TAAGCCCAAG TTCTATAGTT CAAAAGTCAA TTTCTAATTC TGATTATATT GTACTTTTAA TGCATTGTGG ATATTCTAAT AATAATTCTG CTAAAGCATT GCCATCAATC ATAAAACATT TTAAATCAGC TGGATATAGC TTTGAAGTAA TAGATGAAAG CACTCCTGAA ATTTATAGAT TAAAAAATAA ATGTTGA
|
Protein sequence | MKKFVFLLIT LIFSFSALAT SSKPIKAAEL EESTKKIFLT FDDGPGGKVT EEILNTLKEN DVKATFFLIG ELVEKHPDLV KRINDEGHSI GVHTFTHERN KIYRNDSSFL EENLKTQGSI EKVIGKKVFS LRFPFGSNNS TYTLKKSLVD SLHEQGFRIY DWTVDSTDAL NPNLSPSSIV QKSISNSDYI VLLMHCGYSN NNSAKALPSI IKHFKSAGYS FEVIDESTPE IYRLKNKC
|
| |