| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_1316 |
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| Symbol | |
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| ID | 4206486 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens SM101 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008262 |
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| Strand | - |
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| Start bp | 1486037 |
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| End bp | 1488400 |
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| Gene Length | 2364 bp |
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| Protein Length | 787 aa |
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| Translation table | 11 |
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| GC content | 23% |
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| IMG OID | 642565870 |
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| Product | sensory box histidine kinase |
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| Protein accession | YP_698636 |
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| Protein GI | 110803461 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5002] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00351204 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTAATTG GACTTTTTAA CAATTTAGGT ATTAAAGATA AAACATTAAA AAGAATAGCA
ATAGTCACAG TAATATTACT TAGTTTATTT TTTATAAAAG GGTTAAATAT TATTTATGCC
TTAAATAGAG ATTTGTTTAA GGATGTAAGT GTAGTTTATG CTGCTGAAGA AATTATAGTA
ATGACTCAAA TAATTCTTTG CATTATGATA TTATCTATAT GCTTTATATA TTATAGAGGA
CTTAAACGAA AAGAGTTCTT TGGTATATCC CTTGTTTATG TAAGTATTAT TACTGAAATG
ATTTTCATAG TCTTAACAGG AAAAATAGTT GAAAATCAGG TTTATGACTT GAATTTATTT
AGTTTATTAT TTAGAGGGAT ATTACTACTT TTAGCTATTT TATGCCTTGA AAATTTTAAT
GCTTTTATAA GGAAATATAA AAAATTAACA TTAGTACTTG TAATATTGGT AACTATTATA
TTACAAATAT TAAATGTCAA TTATAACATA GGAATATATA CATATAATTT TATATATAAT
TTAACTTTAG TTTTAATAGT TTTAACATAT ATATCTTGTA TAATATTTTG TTTAGTTAGA
ATTTTTCAAT TTAGAGAAAT AACTTATTTA GTAATAATGA TAAGTTCTTC ACTTATGTTA
TTAAAATTAG TTTATGGCCT TTCTTTAAGT ATAACTAATA ATAATCTTAT AAAAATAAAT
ATTATATTTT TTAATTTTAT ATCATTTATA AGCTTTGTAT TTGGTATGTT TTTTGATTTA
CTTCAGGTTA TAAAAAATAA AAATTTTATG CAAGAAGAAC TAAGTGCATT TTTTAACCTA
ATAGAATTTG ATTGCAATAG TGAAGTTGTA GTACTTAGTA ACAATTTAAA AGTTCTTTAT
GCAAATGAAA AATGTAGAAG TAAGAGAATA TCACCTGAAA ATAGAGAAAA TAAAACTTAT
ATTGATTTAG AAAAACAAAT TAAAGGATTT TTATATGATA AAAATATAAT TTGTATAGAA
AGTGTGCTTA GAAATTCTAA AGAATGGAAA GGTATAATAA AGTTAAATGG AGAGGATGAA
GTTGTAAAGG TTAATCTTCA AAAGATAAAA AAAGAAAAAA ATCTTTATTA TGTACTTAGA
ATTAATGATA TAACAGAAGA ATACAAAATG GAGAAAAATT TAAAATTAGA GGAGCAAAGG
CTTAGAGGAG TTACTGAAAA TATAAAAGAT TTAATATTTA CAATTGATGT TGAAGGAAAA
ATAAGCTATG TAAACAAAGC AGTAATAGAT GTTTTAGGAT ATAGTGAAGA AGAATTAATA
GGGAAAAATT ATTATGATTT ATTATTAGTT GAATCTAATT TGAATATAAT AGACAGCAAA
TATTTTAATG AAGATAAGAT TTTAACAATA GATAAGGTAA GATCTAAAAA AGGGTTGGTT
CAATTAGAAT CTATTTCTAG TAGAATTAAG GATAATAAAA ATAATACCTT AGGATGGGTA
AGAGTTGCTA GAAATATAGA GGATGTAAGA GAAATAGAAA TATTAAAGAA TAAATTTGAA
GAAATAAAGC AATACGACAA GGTTAGAAGT GAGTTTTTTG CAAATTTATC TCATGAGCTT
AGAACTCCTA TTAACATAAT ATATTCATGC ATACAGCTTT TAAACACTAG TAAAAAGAAT
AAGGCAAACT TTGTTAATTT ATATGATAAG TATGAAAAAA CTTTAAAACA AAATTGTTTT
AGGATGTTAA GGCTTGTAAA TAATCTTATA GATATAACAA AAATAGATTC TGGTTTTATT
AAGATGGACT TTATTAATTA TGACATAATA AAGCTTACAG AAGATATAAC TATGTCTGTA
ATTCCTTATG TAGAATCTAA GAATATAGAT ATAATCTTTG ATACTAATTG TGAGGAATTA
GAGATAAGGT GTGACCCAGA TAAAATTGAG AGAATAATTT TAAATTTATT ATCTAATGCC
ATAAAATTTA CAGAGCCAGG TGGAAAAATA GAAGTTAGTA TTTTGATAGA TGAAACTTGG
GTAGATATAA GAGTTAAGGA TACAGGTATA GGAATTCCAT CACATATGAA AGAATTTATT
TTTGGAAGAT TTATACAAAA TGATAAATCC TTAAATAGAA ATAAAGAAGG AAGTGGAATA
GGGTTATCCT TAGTTAAATC TTTAGTGGAA TTACACGAAG GAAAAGTTTT CTTAAGAGAA
AGTAATGAAT CAGGTAGTGA ATTTTCAATA TTACTACCTA ATGTGAAATT GGAGGATGAT
GTTTGCGAAA ATAGAAGCTT AGATTATAAA ACAGAGGTTG AAAAAATATC AATAGAGTTT
GCTGATATTT ATGAAATATA TTAG
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| Protein sequence | MLIGLFNNLG IKDKTLKRIA IVTVILLSLF FIKGLNIIYA LNRDLFKDVS VVYAAEEIIV
MTQIILCIMI LSICFIYYRG LKRKEFFGIS LVYVSIITEM IFIVLTGKIV ENQVYDLNLF
SLLFRGILLL LAILCLENFN AFIRKYKKLT LVLVILVTII LQILNVNYNI GIYTYNFIYN
LTLVLIVLTY ISCIIFCLVR IFQFREITYL VIMISSSLML LKLVYGLSLS ITNNNLIKIN
IIFFNFISFI SFVFGMFFDL LQVIKNKNFM QEELSAFFNL IEFDCNSEVV VLSNNLKVLY
ANEKCRSKRI SPENRENKTY IDLEKQIKGF LYDKNIICIE SVLRNSKEWK GIIKLNGEDE
VVKVNLQKIK KEKNLYYVLR INDITEEYKM EKNLKLEEQR LRGVTENIKD LIFTIDVEGK
ISYVNKAVID VLGYSEEELI GKNYYDLLLV ESNLNIIDSK YFNEDKILTI DKVRSKKGLV
QLESISSRIK DNKNNTLGWV RVARNIEDVR EIEILKNKFE EIKQYDKVRS EFFANLSHEL
RTPINIIYSC IQLLNTSKKN KANFVNLYDK YEKTLKQNCF RMLRLVNNLI DITKIDSGFI
KMDFINYDII KLTEDITMSV IPYVESKNID IIFDTNCEEL EIRCDPDKIE RIILNLLSNA
IKFTEPGGKI EVSILIDETW VDIRVKDTGI GIPSHMKEFI FGRFIQNDKS LNRNKEGSGI
GLSLVKSLVE LHEGKVFLRE SNESGSEFSI LLPNVKLEDD VCENRSLDYK TEVEKISIEF
ADIYEIY
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