Gene CPF_1943 details

Gene Information

• Locus tag: CPF_1943
• Symbol: nusA
• ID: 4201975
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium perfringens ATCC 13124
• Kingdom: Bacteria
• Replicon accession: NC_008261
• Strand: -
• Start bp: 2179895
• End bp: 2180995
• Gene Length: 1101 bp
• Protein Length: 366 aa
• Translation table: 11
• GC content: 30%
• IMG OID: 638082812
• Product: transcription elongation factor NusA
• Protein accession: YP_696376
• Protein GI: 110800366
• COG category: [K] Transcription
• COG ID: [COG0195] Transcription elongation factor
• TIGRFAM ID: [TIGR01953] transcription termination factor NusA

Plasmid Coverage information

• Num covering plasmid clones: 20
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATGAAG AATTTCTAGG GGCATTATCT GAAATAGTAA AAGAGAAAGG TATTTCAGTA 
GAGGCTTTAT TAGAAACTAT AGATGATGCT ATAATAGCAG CTTATAAGAA AAACTTTTCA 
AATTCAGGAA CAACTGCACA AAATGTAAAG GTAAAACGTG ATGAGAAATC AGGAGAAATC 
CATGTTTATG CTCAAAAAGT TGTTGTTGAA GAAGTTTATG ATGATGTAAC AGAAATAAGT 
TTAGAAGATG CAAAGGCTAT TAGTGCTATT TATCAATTGG ATGACATAGT AGAAATAGAA 
GTAACACCTA AAAACTTTGG AAGAGTTGCA GCACAACTTG CTAAGCAAAT GGTTATCCAA 
AGAATAAAAG AATCTGAGAG AAATGTAATT TACTCAGAAT TTGCAGAAAA AGAATTTGAC 
ATATTACCTG GTACAGTAAT AAGAAAAGAC AAAGGTAATG TATTTGTAGA CTTAGGAAAA 
ATAGAAGGTG TTTTAGGACC AAATGAACAA ATGCCTACAG AAAAATATAA CTTCAATGAA 
AAATTACAAT TATACGTAGT TGAAGTTAAG AAAACATCTA AAGGTGCTTC AGTTTTATGT 
TCAAGAACAC ATCCAGGTTT AGTTAAAAGA TTATTTGAAT TAGAAGTTCC AGAAATATAT 
GAAGGAATAG TTGAAATAAA AAGTATAGCT AGAGAAGCTG GATCAAGAAC TAAAATAGCT 
GTTTACTCAA ATGATGAATC AGTAGATGCT ATGGGAGCTT GTGTTGGACC TAAGGGTGTT 
AGAGTTCAAA ATATAGTTAA TGAACTAAAA AATGAAAAAA TTGATATAAT AAAATGGAGC 
AATACTCCAT CTGAGTATAT AGAAAATGCT TTGAGCCCAG CTAAGGTTAT AAGTGTAGAA 
GCTGATGAAG AAACTAAATC AGCTAAGGTT ATAGTGGATG ATAGTCAATT ATCATTAGCT 
ATAGGTAAAG AAGGACAAAA CGTTAGATTA GCAGCTAAAT TAACTGGTTG GAAAATAGAC 
ATAAAGAGCA AATCTAAAGC AGAAGAATTA TTACAAGAAG AAGATATTGT TGTTGAAGAA 
GACACTATAA TAGAAGAATA A 

 

Protein sequence

MNEEFLGALS EIVKEKGISV EALLETIDDA IIAAYKKNFS NSGTTAQNVK VKRDEKSGEI 
HVYAQKVVVE EVYDDVTEIS LEDAKAISAI YQLDDIVEIE VTPKNFGRVA AQLAKQMVIQ 
RIKESERNVI YSEFAEKEFD ILPGTVIRKD KGNVFVDLGK IEGVLGPNEQ MPTEKYNFNE 
KLQLYVVEVK KTSKGASVLC SRTHPGLVKR LFELEVPEIY EGIVEIKSIA REAGSRTKIA 
VYSNDESVDA MGACVGPKGV RVQNIVNELK NEKIDIIKWS NTPSEYIENA LSPAKVISVE 
ADEETKSAKV IVDDSQLSLA IGKEGQNVRL AAKLTGWKID IKSKSKAEEL LQEEDIVVEE 
DTIIEE