| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_1857 |
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| Symbol | |
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| ID | 4201310 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens ATCC 13124 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008261 |
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| Strand | - |
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| Start bp | 2092764 |
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| End bp | 2094464 |
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| Gene Length | 1701 bp |
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| Protein Length | 566 aa |
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| Translation table | 11 |
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| GC content | 31% |
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| IMG OID | 638082727 |
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| Product | major facilitator transporter |
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| Protein accession | YP_696291 |
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| Protein GI | 110798704 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.906774 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGAAAA AATCAGTTGG AATTACCATG GCTGTCTTCT TGTTAGGAAT CTTCATGGGA
GCTATTGACT CTGGTATAGT TTCACCAGCA AGAGATATAA TAGCTGATGG ATTAAAAGTT
TCACAAAATG CTAGTGTTTG GGTTGTAACA ATATACACCT TAGCATATGC AGTATCAATG
CCTCTTATGG GAAAACTTTC TGATAAGTAT GGTAGAAAAA AAGTTTACAT GGTTTCAATA
ACTCTATTTG GACTAGGTTC TTTACTATGT GGAGTATCAG ATTACGTAAA TAGTTATACA
TTCTTATTAT TCTCAAGGGT TATAGAAGCA ATAGGTGGCG GAGGTATAAT GCCAATAGCT
ACAGCATACA TAGGAACATC ATTCCCCGTT GAAAAAAGAG GTTCAGCGCT AGGAATGATT
GGAGGAGTAT ATGGAATAGC AACAGTTGTA GGACCAACCT TAGGTTCAGG AATACTTTCT
ATTTTTGGAG ATAAAAACTG GGGATTTTTA TTCTTAGTAA ATGTTCCAAT CAGTATAATA
ATATTACTTA TGGCAACTAA ATTAGAAGAA AATACTTCTG CACAAGGAAT TAAGAAATTA
GATGTTTGTG GTTCAGGGGT ATTAACAATA TTAATTTTAT CTTTAATGTA TGGAGCTACA
AACTTAAAAT TCTATGAGTT TGCTAATTCA ATAAAATCAC TAGATGTTTG GCCATATCTT
TTAATATTTA TAATATCAAT TCCAATATTA GTTTGGGTGG AAAAGAAAGC AGAAGATCCA
GTAATAAACT TATCTTACTT TACTAATAAG GAAATAGCTA TAACTTTAAT ATTAAGCTTT
GTTGTAGGTT GTGGATTAAT GGCAACAGTA TTTATTCCTC AATTTAGTGA AAATATATTA
AGAACACCAA TGGGTAGTGG TGGATATATA GTTACAATAT TTGCAATATT TGTAGGTATA
GCAGCACCTT TAGGTGGAAA ATTCATAGAT AAAATAGGAG TTAAAAAAGT ACTATTAATA
GGTATGTCTT TAGTTATCAT AGGTAACCTT TATCAAGGAT ATGTAACAAC TAAACATCCA
GGTATGGTTA ACTTAATAAT AGGTTTAGCT ATTATGGGAT TTGGTTTAGG ATTCTCTATG
GGAACACCAA TAAATTACTT AATGCTTAGC TTAGTACCAG ATAATGAGGC TACAGTTGGA
CAATCAGCAG TATCATTAAT TAAATCCATA GGTATTGCAG TATCACCAAA TATTCTCATT
AACTTTATAT CAGATGCAGG TAGAAGAGTA CCAGAAGCAT TACAAAAAGT TATGCCACAT
GTAGATGGAA TGTCTAATAT TATGTCAAAT AGTGGTGGAG CTTCAAATGT TGCTAATTCA
ATGGGAAATG CCAGTGTTAC TAATATATTT AGTCTTATAA AAGGAATGGC ACAATCACAA
TTTGCAGCTT TAGGAGACAA ATTTGCAAAT AATCCTCATA TGAATATTGA TATGATTGAA
AAATCATATA TGCAAAGTTT AGATGGAGCT AAAGATGCAA TAGAAACTGC ATTCCAACAA
ACTATGAATA CAGGATATAC TAAATTATTC TTAACATGTG CTATTATAGC TTTAATAGGG
TTAATATTAA CAGCTATGTT AAATAACAAT TTAATAACAA TGAAAAATAG AAGATTAGAA
AAGAAGGAAA AAACTAATTG A
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| Protein sequence | MKKKSVGITM AVFLLGIFMG AIDSGIVSPA RDIIADGLKV SQNASVWVVT IYTLAYAVSM
PLMGKLSDKY GRKKVYMVSI TLFGLGSLLC GVSDYVNSYT FLLFSRVIEA IGGGGIMPIA
TAYIGTSFPV EKRGSALGMI GGVYGIATVV GPTLGSGILS IFGDKNWGFL FLVNVPISII
ILLMATKLEE NTSAQGIKKL DVCGSGVLTI LILSLMYGAT NLKFYEFANS IKSLDVWPYL
LIFIISIPIL VWVEKKAEDP VINLSYFTNK EIAITLILSF VVGCGLMATV FIPQFSENIL
RTPMGSGGYI VTIFAIFVGI AAPLGGKFID KIGVKKVLLI GMSLVIIGNL YQGYVTTKHP
GMVNLIIGLA IMGFGLGFSM GTPINYLMLS LVPDNEATVG QSAVSLIKSI GIAVSPNILI
NFISDAGRRV PEALQKVMPH VDGMSNIMSN SGGASNVANS MGNASVTNIF SLIKGMAQSQ
FAALGDKFAN NPHMNIDMIE KSYMQSLDGA KDAIETAFQQ TMNTGYTKLF LTCAIIALIG
LILTAMLNNN LITMKNRRLE KKEKTN
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