Gene CPF_1501 details

Gene Information

• Locus tag: CPF_1501
• Symbol: smpB
• ID: 4203890
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium perfringens ATCC 13124
• Kingdom: Bacteria
• Replicon accession: NC_008261
• Strand: -
• Start bp: 1712535
• End bp: 1713005
• Gene Length: 471 bp
• Protein Length: 156 aa
• Translation table: 11
• GC content: 31%
• IMG OID: 638082379
• Product: SsrA-binding protein
• Protein accession: YP_695944
• Protein GI: 110800123
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG0691] tmRNA-binding protein
• TIGRFAM ID: [TIGR00086] SsrA-binding protein

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.000046727
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCAAAGA GAAAAGACAA TAAGACATTA GCAGAGAATA GGAAAGCTAG ACATGATTAC 
TTTGTTGATG AGGCTATGGA AGCAGGTATA GCTTTAGTTG GAACAGAGGT TAAGTCTATT 
AGAAACGGAA GAGTTAACTT AAAGGATTGT TATGCAGATA TAAATAATGG AGAAATATTT 
ATAAATAACA TGCATATAAG TCCTTATGAG CAAGGAAACA TATTTAATGT TGATCCTTTA 
AGAAAAAGAA AATTACTTCT TCATAAAAGT GAAATTCAAA GATTAATAGG AATAGTTCAA 
CAACAAGGGG TTGCTTTAAT ACCACTTTCT TTATATTTAA AGAATGGAAG AGTTAAGGTT 
AACTTAGGAG TTTGTAGAGG TAAGAAAAAC TACGACAAGA GAGATACAAT GCTTGAAAAG 
GCTCATAAGA GAGAAATGGA TAGACAACTT AAGGAAAGAA ATAGATATTA G 

 

Protein sequence

MAKRKDNKTL AENRKARHDY FVDEAMEAGI ALVGTEVKSI RNGRVNLKDC YADINNGEIF 
INNMHISPYE QGNIFNVDPL RKRKLLLHKS EIQRLIGIVQ QQGVALIPLS LYLKNGRVKV 
NLGVCRGKKN YDKRDTMLEK AHKREMDRQL KERNRY