| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_3827 |
|---|
| Symbol | bcd |
|---|
| ID | 4183499 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cytophaga hutchinsonii ATCC 33406 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008255 |
|---|
| Strand | - |
|---|
| Start bp | 4414707 |
|---|
| End bp | 4415846 |
|---|
| Gene Length | 1140 bp |
|---|
| Protein Length | 379 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 638073813 |
|---|
| Product | bytyryl-CoA dehydrogenase (short-chain-acyl-CoA dehydrogenase) |
|---|
| Protein accession | YP_680402 |
|---|
| Protein GI | 110640192 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATTTTG ATTTAACTGA AGAGCAAAAA GCAGTGCAGT TGGCGGCAAG AGATTTTGCA
CAAACGGAGT TATTGCCTGG GGTGATAGAA CGTGATGAAC AGCAGAAATT CCCTGCGGAA
CAGATCAAAA AACTTGGCGC ATTGGGATTG ATGGGTATCA TGACGGCTGA AACCTATGGC
GGCGCTGGCA TGGATACCGT ATCCTATGTA TTGGCCATGG AAGAAATATG TAAAGTAGAT
GCTTCCACAG GAGTTTGTAT GTCGGTAAAT AATTCACTTG TTTGCTGGGG CCTTGAGCAT
TTTGGCTCAG AAGCGCAAAA ACAAAAATAT CTTAAACCAT TAGCTTCGGG CGAGCGTATC
GGCGCATTCT GTTTATCTGA ACCTGAAGCT GGTTCTGATG CTACTTCTCA GCGTACAACA
GCTGTAGAAC AGGGCGATCA TTATATTTTA AACGGCACTA AGAACTGGAT CACCAATGGC
AATTCAGCTT CTGTTTATTT GGTAATTGCA CAAACACACC CGGAATTAAA ACATAAAGGC
ATTAATGTGT TTATTGTTGA AAAAGGGACG CCTGGTTTTG TGGTAGGTAA AAAAGAAAAT
AAAATGGGGA TCCGGGCATC CGATACACAC TCTTTAATGT TTACAGATGT AAAAATACCT
AAAGAAAACA GGGTCGGTGA CGATGGTTTT GGCTTCAAAT TCGCTATGCA AACACTTAAT
GGCGGCCGGA TCGGGATTGC GGCACAGGCT TTAGGCATTG CTTCCGGTGC GCTGGAATTA
TCGCTTGCTT ATTCTAAAGA GCGGAAATCT TTCGGAACAG AAATATTTAA CCATCAAGCT
ATTCAATTTA AACTGGCTGA CATGGCAACT AAAATTGATG CGGCCAGATT GTTGGTTTTA
AAGGCCGCTT ATTTAAAAGA TCAGCATAAA GACTATACTG AAGCGGCAGC AATGGCTAAG
CTTTTTGCGT CTCAGGTAGC TATGGATACA ACCATCGAAG CCGTTCAAAT ACACGGAGGA
TATGGTTTTG TGAAGGAATA TCATGTTGAG CGCATGATGC GCGATGCCAA AATTACGCAG
ATTTATGAAG GAACTTCAGA AATACAAAAA TTGGTTATCG GCAGGGAATT ATTCAAATAA
|
|---|
| Protein sequence | MNFDLTEEQK AVQLAARDFA QTELLPGVIE RDEQQKFPAE QIKKLGALGL MGIMTAETYG
GAGMDTVSYV LAMEEICKVD ASTGVCMSVN NSLVCWGLEH FGSEAQKQKY LKPLASGERI
GAFCLSEPEA GSDATSQRTT AVEQGDHYIL NGTKNWITNG NSASVYLVIA QTHPELKHKG
INVFIVEKGT PGFVVGKKEN KMGIRASDTH SLMFTDVKIP KENRVGDDGF GFKFAMQTLN
GGRIGIAAQA LGIASGALEL SLAYSKERKS FGTEIFNHQA IQFKLADMAT KIDAARLLVL
KAAYLKDQHK DYTEAAAMAK LFASQVAMDT TIEAVQIHGG YGFVKEYHVE RMMRDAKITQ
IYEGTSEIQK LVIGRELFK
|
|---|
| |