Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CHU_3775 |
Symbol | |
ID | 4183797 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cytophaga hutchinsonii ATCC 33406 |
Kingdom | Bacteria |
Replicon accession | NC_008255 |
Strand | - |
Start bp | 4362208 |
End bp | 4365021 |
Gene Length | 2814 bp |
Protein Length | 937 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 638073761 |
Product | TPR repeat-containing protein |
Protein accession | YP_680350 |
Protein GI | 110640140 |
COG category | [S] Function unknown |
COG ID | [COG4995] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACAAGC TATTTGTACT TTTCTTTTTA CTGGCTCCGG TTACAGCATT TTCCCAGCTT CCTAAAATCC CGGGGTCAAT TGGCGGCGTT TCCACCTCTG CTATTCTTAC TAAAACAAAA AATGCACTCG TTACGCAATT AGATAAAAGC AAAGCCGAAT ACGACACCAC TAGTTTTAAT TATGCCATTT CACTCAGCGA CAATGCGGGT TTATATGAAA ACGAAGAAAA ATGGCTGCGC AATCAAAAGA TGTTTTCAGA TGTGTTAAGG CAAAGTGATG GATCTTCCTT AACGCCTTTA CAAAAAGCGG AAGAAAACAA TGAAGTTGGG GAAATGATGT ACGCTTCCAA CAAATTCAAT GCGGCCGAAA ATACTTTTTT AAGTTCAAAG CTCATTTATG AAAGTAATGG ACTAACCGCT GAAGCAGGCT ACAGCAAAGT ACTTGCAAAT ATCGGCTTGT TGTATCATAC CATGGGCCGG TATTCGAAAG CAGAAGAATT TGACAAGCTG GCTATTGATA TTCGTAAAAC ACAATCCGGC GAATCCAGTG TTGCTTATGG TTCATCTGTA AATAATCTGG GTGTTTTATA TAAAGATTTG GGCAAATATA CCGAAGCAGA AAAACTGCTG GAAAAGGCCA TTCAATTGAA TGCAATCAAT CCGGGAAAGC AATCGCCTGC TTATGCCATT ACATTAAATA ACCAGGCCAT GCTCTTTGAA GAAATGGGGC GTTTTCAGCA GGCTGATCAG TTATTGGCAG AAGCAATACG AATTGCGTCT GCGGAAATGA CTGAAAAATC AACGAACTAT CAGCGCCTGC TGATCAACCA GGCCTTGCTG TATGAGGAAA TGGGCTCTTA TTCCAAAGCA GATGAGATCT ATAAAAAGGC CATCGCCATT AAAGAAAAAC GTTTAGGCAG CAGCCACCCC GATTATGCGC ATTTATTAAA TCTACAGGCC GAACTATATA TGCAGATGAA CAAAACTTCA GAAGTAGAGT CGTTATTAAA AAAATCAGCA GATATTTATT TGAAAAAATT CGGTGCCAAT CACCCATCTT ATGCAGGTGT ATTGCAGAAT TTAGGAAATT ACTACAGAAC ACAGGATCAG CAGCCGGCCG CTTATACAAA CCTTACAAAA GCACTCTCCA TACGTATTGC AGCTCTTGGT GAAAACCATC CGGATGTTTT GCAGACTAAA GAATGCATTG CCTTGCTGGA TTGGCAGGCA AAAAAATATT CCGTAGCATC ATCCGGTTTT CAAACGGTAC TGGATCAGAA TATGCTTTTG ATCAATGAAT ATTTTGCAGC TCTCAGTGAT GCCGAAAAAG CGCGTTTCTG GGATAAAATG CATCCGCACT TTGATCATTA TGCAGCTTTT GTTGCCGATA CGTATAAAGA GCTGCCAGCG CTGACAGGAC AATTATATAC CTATCAGCTG GCAACAAAAG CATTGTTATT AAATGCTGCA AACAAAACCC GCCAACAGAT ATTAAGCAGC GGAGACGCTT CTTTAATTAA AGAATATCAG GAATGGCTGG ATGCTAAAGA AAGTCTTTCA CGGTTATACA GCATGTCAAA ATCTGAACTG GCTGAACAGC GTATTAATTT AGATTCGATT GAACGTTCAG CTAATTCAAA AGAAAAAAAT CTTTCTGCCC ATTCAGCAGT TTTTAAATCC GGTTATACAA ACGCACCTGT AACGTGGAAA AATATACAGC TTGCCCTGGG TACGGATGAT GCGGCTGTCG AAATCATACA CATTACAAAA TTTGATAAAA TTAAAACGGA TACTATTTAT TATGGTGCGT TGGTGCTTAC AAAAGAAATG AGCCTGCCAG CATTCGTTTT ACTAAAGAAC GGCAACCAGC TCGAAAAAAA ATACCTGGCC TATTATAGAA ATTCGATTAA AAATAAACTC GCCGATGTGT ATTCGTATAC ACAGTACTGG GAAGAGATTG ATAAAAAGAC CAGTGGTAAA AAATCCATCT TCGTATCTAT GGATGGTGTA TACAGCCAAT TAAATATCAG CACACTGAGA TTTTCTGATG GAACGTATTT ACTGGATAAA AAAAATATTC AGCTTATTTC CAATTCAAAA GATATTATTA AACTTAAAAC TGCCGCAGCT TCTACTGCAG CTGCAAGTGC CGTATTGATT GGTAATCCTG TCTTTGGAAC TGCCGGAAGT ATCGCTCCGC TTCCGGGAAC AAAGGTTGAA ATTGAATCAG TCAAAACACA GCTTACAGCA AAAGGATATA AGGTTACAAC GTATGTTCAG AATGAAGCTT CGGAACAGAA TATCCGTAAA GTATCTAATC CTAAAATTTT ACATATAGCT ACCCATGGAT TTTTTATTGC CGAAACACAA GGTGAGGACA AAACGATGGG CATTGGTTCG GAACATTCCG CGCTGAATCC TATGCTGCGT TCAGGGCTGC TGTTGGCAAA TGCGGAAGCG ACAATTGATG CCAACGCCGA GTATGGCGTA TTAACCGCTT ATGAAGTAAT GAATCTGAAT TTAGACAAAA CAGAAATTGT AGTTATGAGC GCCTGTGAAA CGGGCCTGGG AGATGTAAAA AATGGCGAAG GTGTATATGG GCTGCAGCGT GCATTTCTTG TAGCAGGAGC AGATGCATTA ATTATGAGCT TGTGGAAAGT AAATGATGAA GCAACTCAAA AATTAATGAC CAGCTTTTAT AAAAATTATC TGGTATTAGC AGATAAACAA AAAGCGTTTA AGGCTGCTCA GGCGGAATTA AAAACCCTTT ACAAGGAACC GTATTACTGG GGAGCGTTTG TATTGATTCA GTAA
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Protein sequence | MNKLFVLFFL LAPVTAFSQL PKIPGSIGGV STSAILTKTK NALVTQLDKS KAEYDTTSFN YAISLSDNAG LYENEEKWLR NQKMFSDVLR QSDGSSLTPL QKAEENNEVG EMMYASNKFN AAENTFLSSK LIYESNGLTA EAGYSKVLAN IGLLYHTMGR YSKAEEFDKL AIDIRKTQSG ESSVAYGSSV NNLGVLYKDL GKYTEAEKLL EKAIQLNAIN PGKQSPAYAI TLNNQAMLFE EMGRFQQADQ LLAEAIRIAS AEMTEKSTNY QRLLINQALL YEEMGSYSKA DEIYKKAIAI KEKRLGSSHP DYAHLLNLQA ELYMQMNKTS EVESLLKKSA DIYLKKFGAN HPSYAGVLQN LGNYYRTQDQ QPAAYTNLTK ALSIRIAALG ENHPDVLQTK ECIALLDWQA KKYSVASSGF QTVLDQNMLL INEYFAALSD AEKARFWDKM HPHFDHYAAF VADTYKELPA LTGQLYTYQL ATKALLLNAA NKTRQQILSS GDASLIKEYQ EWLDAKESLS RLYSMSKSEL AEQRINLDSI ERSANSKEKN LSAHSAVFKS GYTNAPVTWK NIQLALGTDD AAVEIIHITK FDKIKTDTIY YGALVLTKEM SLPAFVLLKN GNQLEKKYLA YYRNSIKNKL ADVYSYTQYW EEIDKKTSGK KSIFVSMDGV YSQLNISTLR FSDGTYLLDK KNIQLISNSK DIIKLKTAAA STAAASAVLI GNPVFGTAGS IAPLPGTKVE IESVKTQLTA KGYKVTTYVQ NEASEQNIRK VSNPKILHIA THGFFIAETQ GEDKTMGIGS EHSALNPMLR SGLLLANAEA TIDANAEYGV LTAYEVMNLN LDKTEIVVMS ACETGLGDVK NGEGVYGLQR AFLVAGADAL IMSLWKVNDE ATQKLMTSFY KNYLVLADKQ KAFKAAQAEL KTLYKEPYYW GAFVLIQ
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