| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_3498 |
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| Symbol | oppA |
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| ID | 4183892 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | + |
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| Start bp | 4046418 |
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| End bp | 4048178 |
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| Gene Length | 1761 bp |
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| Protein Length | 586 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 638073485 |
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| Product | oligopeptide ABC transporter, solute-binding protein |
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| Protein accession | YP_680074 |
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| Protein GI | 110639864 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.690705 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAAT CGTTACTACC ACTTTTACTT GCAGTTTTTG TAATGGGATC TTGTTCCAAT
GACAAAGACG GAAAATCTGA AAATGCTGAA GCATTAATAG AAGCCAAAGG CGGTAAATAT
TCTGGTGGAA TTTTTAAGTA CAATGAATCC GAGTTTCTTA AAAATTTATT CCCGCATAAC
ATTACTGATG CTACTTCATA CAGAATTGCA TCTCAGGTTT ATGAAGGCTT GTTAAAATTC
TCACAGGATT CGTTGCAGCT TACAAATGGC TTGGCTGAAA GCTATACCGT TGATGAAACA
CAAACGATTT ACACATTTAA ACTTCGTAAA GGTGTTAAGT TTCATGATAA CGCTTGTTTC
CCAGAAGGAA AAGGCCGTGA GTTTACTGCA GAAGATGTGA AATATTGCTT CAGCTTACTG
TGTACATCTA ATCCTCAGCA AAATCAAGGT TTCAGCATGT TCCAGGGAAT TCTTAAAGGT
GCAGATGCTT ACTATGAAGC AAGTACCGGC GGAAAAAAAC CTGAATTTGA AGTAGAAGGT
ATCAAAGTTA TTGATCCGTA TACAATTGAA TTTACATTAC TGGAGCCAAA CTCTATTTTC
CCATACAATC TTGCAAGACC ATTCACATTT ATCTTTGCTA AAGAAGCATA TGAAAAATAT
GGCCAGGAAA TGCGTGTTAA AGCGGTAGGG ACAGGTCCAT TTGTTATTTC AAGCATTGAC
GAAGGAACTT CCGTTAACTT ATTAAAAAAT CCGAACTATT ACCTGAAAGA TGAAGCAGGT
AACCAACTTC CTTATTTGAA TGGTATTGCT GTTAAATTCT TAAAAGATCG TAAAATTGAA
TTGATCGAAT TTAAGAAAGG CAATTTCCAC ATGATGTACC GTTTACCAAC TGACTTCATT
ATTGATATTG AAGAACAATC TGTAAAGAAA ACCGGCGAAT ACGGAATGTA TGAATTACAG
AAAAATCCTG AAATGGCTGT GCACTTCCTT TCTTTTGCAA ACCAGGGAAA AATGTTCAGC
AACATTAATC TTCGTAAAGC AATTTCTTTT GGTATCGATA GAAAAATGAT TTTGGATAAA
GTATTGGATG GTGAAGGCGA TGCTCCTGGC TTCTGGGGAA TTACACCGGT AAACGTTTTC
CCTCAATATG ATGCAAAATC AATTACCGGA TATACCTTAA ACTTAGATTC TGCAAACTAT
TACCTTAAAA AGGCCGGTTT CAAAAGCGGT GCAGATGTTC CTAAAATTGT TCTTGAGCTT
AACTCAGACG GCGGAAGAAA TGAAGCTGTA GCATCGGAAG TAAGAACACA ATTAAAAAAC
AACCTGAACA TCACAATCGA AACAAATGTA GTTACTACTG CAACATTGAT CGATAACATG
ATCGGAGGTA AATCAGATCT GTTCCGTGTA GGTTGGATTG CTGATTATCC GAGTCCTGAA
AACTTCCTTT GGTATTTGTA TGGTAAAAAC GTACCTGCAG GTCCTTCAAG TTCTTCTTAC
CCGAACATGG CACGTTACAA AAACAGCAAA TTTGATGAGT TATATGAAAA AGGTTTAAAA
GCTCAAACTG ATGCTGATGC CTATAAATAT TTCTTAGAAG CTGAAAAAGT TGCGATGTAT
GAAGCTCCAA TCGTAGTATT ATGGTACGAT GAAGCATACA GATTAATGCA GCCAACTGTT
AAAAACTTCC CGAACAACGC AATGCAATAC AGAGATTTCA CAGCTGTTTA TTTAACTCCT
TCTAAGAGCG AAGCAAAATA A
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| Protein sequence | MKKSLLPLLL AVFVMGSCSN DKDGKSENAE ALIEAKGGKY SGGIFKYNES EFLKNLFPHN
ITDATSYRIA SQVYEGLLKF SQDSLQLTNG LAESYTVDET QTIYTFKLRK GVKFHDNACF
PEGKGREFTA EDVKYCFSLL CTSNPQQNQG FSMFQGILKG ADAYYEASTG GKKPEFEVEG
IKVIDPYTIE FTLLEPNSIF PYNLARPFTF IFAKEAYEKY GQEMRVKAVG TGPFVISSID
EGTSVNLLKN PNYYLKDEAG NQLPYLNGIA VKFLKDRKIE LIEFKKGNFH MMYRLPTDFI
IDIEEQSVKK TGEYGMYELQ KNPEMAVHFL SFANQGKMFS NINLRKAISF GIDRKMILDK
VLDGEGDAPG FWGITPVNVF PQYDAKSITG YTLNLDSANY YLKKAGFKSG ADVPKIVLEL
NSDGGRNEAV ASEVRTQLKN NLNITIETNV VTTATLIDNM IGGKSDLFRV GWIADYPSPE
NFLWYLYGKN VPAGPSSSSY PNMARYKNSK FDELYEKGLK AQTDADAYKY FLEAEKVAMY
EAPIVVLWYD EAYRLMQPTV KNFPNNAMQY RDFTAVYLTP SKSEAK
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