| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_3127 |
|---|
| Symbol | |
|---|
| ID | 4186808 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cytophaga hutchinsonii ATCC 33406 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008255 |
|---|
| Strand | - |
|---|
| Start bp | 3574033 |
|---|
| End bp | 3575298 |
|---|
| Gene Length | 1266 bp |
|---|
| Protein Length | 421 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 638073115 |
|---|
| Product | transport protein |
|---|
| Protein accession | YP_679709 |
|---|
| Protein GI | 110639500 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0738] Fucose permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.361188 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAACAC ACATCAATCC GAACAAATTA TTTTTTGCCA GCTGCATTGC TATTATTGCA
ACAGCGATGA CGTTTGCCAT TCGTGCCGGA CTGGAAAAGG AATATTGTCA CGTATTTTCG
CTCAACCATG AACAGATTGG TTATGTACTG GGTACTGCTT TCTGGGGATT TACGCTGTCA
ATCATTTTTG GCGGCTTTCT CTGTGATCTG TTAGGCATGA AGCGTTTACT TGCCATTGCA
TTTGCAGGAC ATGTGCTGGG TATTATATTG ACCATCCTGT CAGATGGATT CTGGTCGCTG
TTTTATTCAA CCTTGCTCAT AGGTATTGCA AATGGAATGA TTGAAGCTGT TTGTAATCCA
TTGGTTTCGA CCTTATATAA AAATGATAAA ACAACAAAGC TAAACCGCCT GCATGTATGG
TTTCCGGGCG GCATTGTGAT CGGCGGATTG ATCGTATTCT TTTTTAAATC CTGGGGAATT
GCAAAAGAGT ATCAGCTGGC AACGATTTTA ATTCCTACGT TTATGTATGG GATATTATTT
TTTAAGGAAC ATTTTCCCGC AACCGAACGG GTAGATTCAG GTATATCTTT CAAGCAAATG
TTTCAGGCTT GTTTGAATCC GTTATTTATT GTAATGTTAT TTTGTATGCT GTTAACAGCA
AGTACAGAGT TTGGCACCAA TCAATGGATC TCAAATTTTC TTGGCAGCTT AGGTGTGAAA
GATATTTTGC TGCTCGTATA TATAAATCTA CTGATGGCTA TTGGAAGAAC CTTTGCAGGA
GGTTTTGTAC ATACGCTTTC GCCGATTGGT ATGCTGATCT TCTCGGCTGT TTTTTCAGCT
ATCGGATTAT TGATGTTTGG CTATGTGGAG GGATATTGGG CATTTCTACC GGCAACTATT
TTTGCATTTG GCATTTGTTT CTTCTGGCCA ACCATGCTTG GTTTTGTTTC AGAAAATTTA
CCGAAAACAG GAGCACTTGG TATTTCATTG ATGGGCGGTG CCGGCATGCT GTCTGTTTCA
TTTGTACTTC CGTTTATGGG GAAATTGTAC GATAGTAAAA CGTTAGCGCA TATGCCCGCG
GGACATGCGT TAGAAGCATT ACATACAATA AATGAATCGC ATGCGGATAA TGCACGATTG
AAAACAGCAC AACTTATAGC GGGTATAGAG ACCCTGCAAT TGGTTGCCCT GCTGCCTGTA
ATATTAACGG TGGTATTTAC AGGAATTTAT CTCGCAAAGA GAAAATTGCG AAATAATAAA
TCATGA
|
|---|
| Protein sequence | METHINPNKL FFASCIAIIA TAMTFAIRAG LEKEYCHVFS LNHEQIGYVL GTAFWGFTLS
IIFGGFLCDL LGMKRLLAIA FAGHVLGIIL TILSDGFWSL FYSTLLIGIA NGMIEAVCNP
LVSTLYKNDK TTKLNRLHVW FPGGIVIGGL IVFFFKSWGI AKEYQLATIL IPTFMYGILF
FKEHFPATER VDSGISFKQM FQACLNPLFI VMLFCMLLTA STEFGTNQWI SNFLGSLGVK
DILLLVYINL LMAIGRTFAG GFVHTLSPIG MLIFSAVFSA IGLLMFGYVE GYWAFLPATI
FAFGICFFWP TMLGFVSENL PKTGALGISL MGGAGMLSVS FVLPFMGKLY DSKTLAHMPA
GHALEALHTI NESHADNARL KTAQLIAGIE TLQLVALLPV ILTVVFTGIY LAKRKLRNNK
S
|
|---|
| |