| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_2008 |
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| Symbol | yiaD |
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| ID | 4187109 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | - |
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| Start bp | 2343245 |
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| End bp | 2344774 |
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| Gene Length | 1530 bp |
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| Protein Length | 509 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 638072011 |
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| Product | outer membrane protein |
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| Protein accession | YP_678616 |
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| Protein GI | 110638407 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system
[COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.206588 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAATT ATTTGATTTA CTGTCTTCTT ATTTTTTGTA TTCAGGCAGC TGTGTGCAGT
TCAATTGCTA ACGCACAGGA TGACACACCT ACGTTAATCA ATCCGGGTTT ACGTTCACTG
GGAAGTCCCA TTAATACACT TCAGTTTTCG GAGTTTGCAC CCACCATAAG CGCAGATGGT
AAAACGCTTA TCTATGAATC AGATAAAAGC GGGAGATGGC GTTTGTATAT ATCCTATCAA
CAGAATGGGG CCTGGTCTGA ACCTAAAGAT ATGGATGTGA TCAATAACCG TGTACAGCCG
GGAGATTTTA TCGGCGGCCC CTGTTTTAGC TATGACGGCA ACCGCTTATA TTTTACATCC
AACATGAAAG GTACTGTGGG CGGGATGGAT CTCTGGTACA GCGAAAAAAT AAATGATGTG
TGGCAGGCTC CTAAAAACAT GGGCCGCACC GTAAACACTG CCGGCTATGA TGGTTTTCCG
TGCGTATCTC CGGATAATAA AACACTGTAT TTTATGCGTG CCGGAAACAG TAACTCGCCA
ACAGGCCAGC GTTGCTGTAT CTTGATGTAT GCCGAAAAAA GAGGGAACTA TTTTATTAAC
CCGAAGGCAC TGCCGGCCCC TGTAAATACG GGTTGTGAAG GGTATCCGAG GATTATGGCA
GATGGGAAGA CATTGATTTT TTCATCTTAC CGTACAAGCG GAAAAGGTGG CTATGATTTA
TATCAGTCTA AAAAAACAGG TTCTAAATGG AGTACACCTG TTGCCATGGA ATTTATTAAT
ACACCAAAAG ATGATGAACT TATATCTGTA CCGGCTTCCG GAGATGTGAT CTATTTATCC
AATACAAATA AAAATAATAA GGATGATATC TACAGGCTGC CATTGCCTAA AGAGTTCAGG
CCGGAAGAAG TAGTACTTGT TGAAGGTGTT GTAAAAAATG AAGAAACGAA TAAACCCATG
CCGGCTATTA TTCGCGTAAG TAATATAAAA ACCAAGGAAA AAATTTCTGA AACGGAAAAC
GATTCCTTAT CCGGCAAATA CAATCTGTAT CTGCAGAAAG GTAAAAAATA CGATGTGTCT
GTAACCTCTA AAGGATACAG CTTTCAGTCT GAAGTGTATG ATCTGGAGAA GGCTGTAGCG
TATGAAACAA TAAAGAAAGA CATGGTGTTA GAACCGCTTA AGTTGAATGC GTCGTTCAGG
TTGAATAATT TATTTTTTGA TTTTGATTCC GCATCGTTAA CAAAAGAATC GGAACTGGAG
CTGGACCGTG TTATTGAAAT GATGAAAACA AACGCGACCA TGCAGGTAGA AATTTCTGCG
CATACAGATG ATATGGGAAG CGATGCGTAC AATCAAAAAC TTTCACAATT AAGGGCCGAA
TCGGTCGTGA AATATCTAAC ATTACATGGT ATTATTACTA CCCGGTTGGT AGCGAAAGGG
TATGGAGAAT CTGTACCATC TGTTCCCAAC GATACAGAAG AGAACAGAGC GAAAAACCGC
AGGGTAGAAT TTAAAATTAT TAAATTATAA
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| Protein sequence | MKNYLIYCLL IFCIQAAVCS SIANAQDDTP TLINPGLRSL GSPINTLQFS EFAPTISADG
KTLIYESDKS GRWRLYISYQ QNGAWSEPKD MDVINNRVQP GDFIGGPCFS YDGNRLYFTS
NMKGTVGGMD LWYSEKINDV WQAPKNMGRT VNTAGYDGFP CVSPDNKTLY FMRAGNSNSP
TGQRCCILMY AEKRGNYFIN PKALPAPVNT GCEGYPRIMA DGKTLIFSSY RTSGKGGYDL
YQSKKTGSKW STPVAMEFIN TPKDDELISV PASGDVIYLS NTNKNNKDDI YRLPLPKEFR
PEEVVLVEGV VKNEETNKPM PAIIRVSNIK TKEKISETEN DSLSGKYNLY LQKGKKYDVS
VTSKGYSFQS EVYDLEKAVA YETIKKDMVL EPLKLNASFR LNNLFFDFDS ASLTKESELE
LDRVIEMMKT NATMQVEISA HTDDMGSDAY NQKLSQLRAE SVVKYLTLHG IITTRLVAKG
YGESVPSVPN DTEENRAKNR RVEFKIIKL
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