| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_1796 |
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| Symbol | ompA |
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| ID | 4184692 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | - |
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| Start bp | 2105831 |
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| End bp | 2108542 |
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| Gene Length | 2712 bp |
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| Protein Length | 903 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 638071795 |
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| Product | outer membrane protein 3a |
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| Protein accession | YP_678405 |
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| Protein GI | 110638196 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.446296 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATAAGT TACGTTTAAT CATATCGATT TTAATTCTTG TAGTTTTTTC TGCAACGACT
TCTTATGCTC AACAAAAAAA GAAGCATATG AGTACGGGTA AAATTCATGC GTCTCAACAA
AAAGGCGATG AACATTTCTC CAGATACGAA TATTATTTAG CGGCACAGGA ATATAAAATT
GTTGTAGATG AAGAACCTTC TAATTATTAC GCTGTATTTA AATTAGCGGA ATCTTACCGC
GAATATTTTG ATTATGCATC CGCTGAAAAA TATTATAAGA TTATTATTGC CAAAGATCTT
CCTGAATATC CATTAGCCCG TTTCTGGTAT GCTATTACGT TACGGGATAA TGGGAATTAC
TCTGGTGCTA AAACTAATTT TCAGCAATTT TTAAATGAAT ATAAAGAAAC ATCTTTATCC
GCAGAAGAAT ATAAAGACCG TGCACGTAGT GCGGTAGATG GTCTGGAACT GGCAGAAGCT
GAAATGAAAT TACCACAGCG TGATTATACC TTTCATTGTT TGCCGGAACC GCTTAATACA
AAATATTCAG AATATTCACC GGTTATTGTG GGTGAAACCG ATTCGATTGT TGCCTTTACG
TCTTCAAGAG AAGGATCTAT GGGAAACGTG GCCAATGCTA TGTTAGGTGG ATCAACAAGT
GATAACTACC GCTATGTTTT TGATGGGAAG TCTGCCTGGA TTCCGTATGT GCCGGTACCT
GATGATAATT TTGCTTTAGC GAATTCTATT TACAATGAAA GTCCCGGGTC ATTTACCAAA
GATGGTAAAA AGTTTTATTT CACCCGCTGC GATGAAAAAT TAGTGATCGG TAAATACGAA
GAATATAACT GTGTAATCTA TGTAATGAAA AAAGATGCTG CCGGTATGTG GACAGCACCT
GTCCGTTTAA ATGAAAATAT TAATATGAAA GGCCAATGGA ATAGCCAGCC TTCTATATCT
CCGGATGGGA AAATTTTATT CTTTACTTCT AAAAGACCCG GAGGAATTGG CATGCATGAT
ATCTGGTTTT CAACCTGTAC AAAGGATGAT AACTGGGGAC CGCCTTCAAA CCTGGGACAA
GGTGTAAATA CCATATTCAC AGATATGTCG CCGAGATATT ATGCCGAAGA CCGTTTGCTA
TACTTTGCTT CGAATGGACA TAATGGCTTT GGTGGTCTGG ATATTTTTGT AGCGAAAGAA
TCAGAAAATT TTGAAACATC TACAAACATC GGGATGCCGT TTAATTCACA CCGCGATGAT
TTCTATTTTG TCTTGGGGAA CAAATTCGGT TATCTTTCAT CAAACAGACA GGGTGGTGTA
GGAAACGATG ATATTTACCG GTTTAATATC ATTCCTAAAG AAGAAGCAGT ACTTACCAAA
ATTAACGCAG ATTCTATTCC GGCAACCGTT AAAAGTATTT CAGTTGTAGG TAAGGTAGTT
GATGACAAAG GGCACAAAGC ATCTAATGTT GAAGTAGCTT TAACAGATGC GAATGATGTT
AAATTAAAAG TTACCAAAAC CAACGACGAA GGTGTATTCC GGTTTGACAA TCTGGCTACA
GGGAATTACA GGGTTGTATT GATTGAAAAA GATTCAAAGG TAACGCAAAA GATCTCCTAT
AAAGTTGATA CCATCATTAT TCAGTCGTCA ACGATTGCAG CTAACCGGAA ATTATTTGAG
AACATCTATT TTGATTTTAA TCAGTCTGAT TTACGTCCGG AAGCTAAAAA GACACTGGAC
GAATTGGCCG CTTATTCAAA TAAAAATCCT CAGATACAAA TTGAGCTGAA TGCTAATACC
GATGGGTTGG GAACGGATAC ATACAATAGG GCTTTATCTG AAAAACGCGG GCAGGCAGCT
ATTGATTATT TGATTGGCAA GGGCGTGGAT CATTCGCGTA TTGTTATGAA TCCGCTGGGT
AAAGAGCGAC CGCTTACATC CAACGATAAT GAGGTCGGAC GACAATTAAA CAGACGTGTT
GAATTTTATA TTCTGGGCGG TCCGAATTAT GAAACAAAGA ACATGGCTTA TGTAGTTGAG
CCGAAAGCTA CGTTGTATTC CATTGCACAG AAATTCAACA TGACGGTTGA AGAAATCCGT
GAAATTAATG CACTGTCTTC CGATGACGTG ATTCCCTTTA CACCTTTACG AGTGAAGCGT
AATGTAGGTG ATAACGATAT CATTGCACAG GTATCAATGA CCGAATCAAT GACAACAACC
GATCAGAAGA AGAACAAAAA GTATTATAAT AAACTGGCAG AAAAGAATGC CGGCATAGAT
GCATCCATGT CGTATAATAA TATTGATATT GCTGAGAAGA ATGAGATCAT TGCATCTAAA
AATTCAGAGA TTACTAAAAA CCTGGCACTG AAAAAAGCAC AGCAGGTATC GTTGAAAGAG
GGGGAAGACC TATATAAAGT TCAGCCTAAA AACACCTTGT TCTCTATTGG TAAATTGTAT
AAAATGTCCG TTGATGACAT CAAAACATTA AATAATTTTA AATATGATAC AATTTATGTA
AATCAGCTGA TAAAAGTTAA AACAGGTATT TATAAGCCTG CAGCAAATGA GTATTTAGTT
AAAGAAGGAG ATACCCTTGA AAATATTGCT TACACCCACA ACGTAACCGT AGAGCAGATT
ATGGCACTCA ACCCGATTGA TGGATATGTA TTGCAGCGCA ACATGATCTT ACGCTTACGC
AAAGACGAAT AG
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| Protein sequence | MNKLRLIISI LILVVFSATT SYAQQKKKHM STGKIHASQQ KGDEHFSRYE YYLAAQEYKI
VVDEEPSNYY AVFKLAESYR EYFDYASAEK YYKIIIAKDL PEYPLARFWY AITLRDNGNY
SGAKTNFQQF LNEYKETSLS AEEYKDRARS AVDGLELAEA EMKLPQRDYT FHCLPEPLNT
KYSEYSPVIV GETDSIVAFT SSREGSMGNV ANAMLGGSTS DNYRYVFDGK SAWIPYVPVP
DDNFALANSI YNESPGSFTK DGKKFYFTRC DEKLVIGKYE EYNCVIYVMK KDAAGMWTAP
VRLNENINMK GQWNSQPSIS PDGKILFFTS KRPGGIGMHD IWFSTCTKDD NWGPPSNLGQ
GVNTIFTDMS PRYYAEDRLL YFASNGHNGF GGLDIFVAKE SENFETSTNI GMPFNSHRDD
FYFVLGNKFG YLSSNRQGGV GNDDIYRFNI IPKEEAVLTK INADSIPATV KSISVVGKVV
DDKGHKASNV EVALTDANDV KLKVTKTNDE GVFRFDNLAT GNYRVVLIEK DSKVTQKISY
KVDTIIIQSS TIAANRKLFE NIYFDFNQSD LRPEAKKTLD ELAAYSNKNP QIQIELNANT
DGLGTDTYNR ALSEKRGQAA IDYLIGKGVD HSRIVMNPLG KERPLTSNDN EVGRQLNRRV
EFYILGGPNY ETKNMAYVVE PKATLYSIAQ KFNMTVEEIR EINALSSDDV IPFTPLRVKR
NVGDNDIIAQ VSMTESMTTT DQKKNKKYYN KLAEKNAGID ASMSYNNIDI AEKNEIIASK
NSEITKNLAL KKAQQVSLKE GEDLYKVQPK NTLFSIGKLY KMSVDDIKTL NNFKYDTIYV
NQLIKVKTGI YKPAANEYLV KEGDTLENIA YTHNVTVEQI MALNPIDGYV LQRNMILRLR
KDE
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