| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_1181 |
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| Symbol | uhpA |
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| ID | 4183392 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | - |
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| Start bp | 1357217 |
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| End bp | 1358173 |
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| Gene Length | 957 bp |
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| Protein Length | 318 aa |
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| Translation table | 11 |
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| GC content | 32% |
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| IMG OID | 638071178 |
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| Product | response regulator, positive activator of uhpT transcription |
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| Protein accession | YP_677796 |
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| Protein GI | 110637589 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0000000041551 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.008996 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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| |
Sequence |
| Gene sequence | ATGCTCTTGC CTGGAACTGA AATTCACATC TTCGTTTTTT TTATTTTGGT TGTTGAATTT
ATTTTCTTTC TATTTCAGAT CATTTATTAT TTTTCACGGC CAACCGACAT ACAACGATTA
CGTTTTCTTC TGTTGCTTTT ATTTGCTGTA TATTATAATA GTGTAAGCGG TTTCCTGCCC
GATAAAAACA TACCCTTATC TATAGAGGTA CAAAATACCA TTGCATATTC CGGAGGCCTG
TTATTATCAT TTTACCTACC CTATTACATC TATAAATCTT TTAATTTGGC ATCTCTTAAG
TTTTATGCGT ATTGGGGCTC TGTGGTTTTT TTATTCATGC CATTTTTCAT GTGTTTTGTA
GTTCCTTATT ATTTCACCGG AGATATAAAC CTAAGCCGAA AACTGGTGGT AATTGTGCCT
TTTATATATG CACTGAGTTT TATTTTTTGC TTTACAAAAG CTATTCGGGA AGCATATAGC
TATTTAATAC AGACATTTTC TAAAATTGAA ATGGCAGGCA TATATATTAC TGTTATATTC
TGGACTGCAT TACCTATTAT TGTTTATTTT GACGGCAGTC AATTGGTAGA AAATACAATA
GCAAATGCAG GATTCCTTCT TTTAATTATT ATTGCTATTA GAAAAAAGAT TTCTGAATCA
AGATTAGAAT ACCAGATGCT TTTATTATCA AAAGATGACT CTAAAAACAC TGAAATTGAA
ATCGTATTTG ATGAAAAACG TTTTCAGGAA AACTGCGCTG ATTTTAATTT AACAGCCCGT
GAAAGGGAAA TTATACACCT GCTTGCAAAA GCGTATACGT ACAAAGAAAT TGCAGAAGAA
TTATTTATAT CTGACAGAAC TGTAGCGAAA CATATAAGTA ACATTTATTC AAAAACAGGT
GTGAGCCAAA AGTCTGAACT TTTAGCAAAG CTGGAATATT CATTACTCAT TGCTTAA
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| Protein sequence | MLLPGTEIHI FVFFILVVEF IFFLFQIIYY FSRPTDIQRL RFLLLLLFAV YYNSVSGFLP
DKNIPLSIEV QNTIAYSGGL LLSFYLPYYI YKSFNLASLK FYAYWGSVVF LFMPFFMCFV
VPYYFTGDIN LSRKLVVIVP FIYALSFIFC FTKAIREAYS YLIQTFSKIE MAGIYITVIF
WTALPIIVYF DGSQLVENTI ANAGFLLLII IAIRKKISES RLEYQMLLLS KDDSKNTEIE
IVFDEKRFQE NCADFNLTAR EREIIHLLAK AYTYKEIAEE LFISDRTVAK HISNIYSKTG
VSQKSELLAK LEYSLLIA
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