Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CHU_0482 |
Symbol | ompA |
ID | 4185467 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cytophaga hutchinsonii ATCC 33406 |
Kingdom | Bacteria |
Replicon accession | NC_008255 |
Strand | - |
Start bp | 563074 |
End bp | 564936 |
Gene Length | 1863 bp |
Protein Length | 620 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 638070489 |
Product | OmpA family outer membrane protein |
Protein accession | YP_677111 |
Protein GI | 110636904 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.83961 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.790259 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAACCGTA TTCTATTTAT TCTTCTTTCT TTTTTTCTGT TTATCTGCTC AGTTTTCGGT CAGGATGATA AACTGATCAA AAAAGGTGAC GCCGCTTTTC AAGCAAAAAA TTATTCAGAC GCGTTTGTCA ATTATGAATT AGCCTGGCAG CAAAATAAAG AACATCCATA TGTAAACTTC ATGCTTGCTC AGTGTTACCT GCTCACTTCT CCCAAGCAAA AAGCGCTGGA CTATGCGGGT GTTGCGGTTC GTAAATCTCC TAACCCAACT AATGAAATGT ATTTTGTGTA TGCGCAAGCA TTACATCAGA ATCACCGCTG GGATTCGGCT ATCTATTATT ACAAAAAATC TGATCCAGGA AAACTGAATT CTAAAAACAT TTCACGTCTG GAAGGTGAAT GTATGAATGG CAAACGTTAT ACAAGCAATC CTAAAAACAT AAAAATTACC AATGCCGGCG CATTGGTAAA CTCGCAGGGT ATGGATTATC TTCCCAACAT TACAGCAGAT CTTTCTAAGC TGTATTTTAC TTCCCGCAGA GGCGGCAGTA CCGGCGGCAA GCTTGAAGCC GACGGGCTTC CTTATGAAGA TATTTATATG TGCAGCAATG TTGGGGGCGC CTGGAACCAG GCAATAAATA TAGGAGCGCC TTTAAATACA GATGTACACG ATGCCTGTGT GGGTATTTCA GAAGGCGGGC AAACCATGTT TATTTACCGG GGCGTGAATG GCGGAGATAT TTTTCAATCT GAATTAAAAG GAAAAAAATG GAGCGCCGCT TCGCCTTTGC CCATGAATAC AGAGTTTTTT GAAACTTCAG CGTGTCTCTC ACCCGATGAG CGTACCCTCT TTTTTGTCCG TGCAACAAAT GCCTATTCAA ACAGAGATAT TTATATGTGC AGCAGAACCG TTGGCGGTAA TTGGAGCAAA CCTGTGAAAC TCACCATCAA TACCCCGTTT GACGAAGACG CTCCGTATAT GCACCCGGAT GGAAAAACAC TTTACTTCAG TTCCAAAGGC CATTCTACCA TGGGTGGTTA TGACGTGTTT AAAACAACAA AGTTAGCCAA CGGTGTATGG TCAACACCGG AAAATATGGG CTCGCCTGTT AACACGGCGG GCGACGACGT GTATTTTGTA TTATCTGCAG ATGGAAAAAT CGGTTATTAT TCTTCCAATA AAGAAGGCGG TTTCGGGAAG CAGGATATTT ATTCGATCCG TATGCCTGCA GCAGAAAATG AACCGGAGCT TGCGTTGTTA AAAGGCAAAA TACTTGACGA CCAGACAGGA AAACCAACGG AAGCTTCCAT CACCATTACA GATAATGCAA CAAAGGAAAT TGTTGCCAGA TATAGGTCAA ATAGTGAAAC AGGTGAATAC CTGCTTTCGC TGCCAGCGGG TAAAAACTAT GGGATTGCTA TTGAAAAAGA GGGCCATTTA TTTTATTCCG AAAATATGAC ACTCAATAAT ACCAATGGTT TTAAAGAATA TAAACAGGAT ATTACATTGG TAACAATTAA AACCTCCGGT AAAATTATTT TGAGAAATAT TTTCTTTGAT TCCGGCAAAG CAACCATACG CTTAGAATCA ACGGCTGAAC TCTTAAAACT GGTTGACCTG CTAAAAAACA ATCCAACCTT GCGTATTGAA ATTGCCGGCC ATACGGATAA TATCGGCGAT GAAACATTAA ATCAGAAATT ATCTGAAGAA CGCGCTAAAA ACGTCGTAAC TTTTTTAACT GCTAATGGCA TAAGCGCAGG CAGATTAGTT GCCAAAGGTT ACGGCTCCTC TCAACCTGTA GCTCCGAATA CAACAGATAC CGGCAGGCAA CAAAATCGCA GAACTGAAAT AAAAATTCTA TAA
|
Protein sequence | MNRILFILLS FFLFICSVFG QDDKLIKKGD AAFQAKNYSD AFVNYELAWQ QNKEHPYVNF MLAQCYLLTS PKQKALDYAG VAVRKSPNPT NEMYFVYAQA LHQNHRWDSA IYYYKKSDPG KLNSKNISRL EGECMNGKRY TSNPKNIKIT NAGALVNSQG MDYLPNITAD LSKLYFTSRR GGSTGGKLEA DGLPYEDIYM CSNVGGAWNQ AINIGAPLNT DVHDACVGIS EGGQTMFIYR GVNGGDIFQS ELKGKKWSAA SPLPMNTEFF ETSACLSPDE RTLFFVRATN AYSNRDIYMC SRTVGGNWSK PVKLTINTPF DEDAPYMHPD GKTLYFSSKG HSTMGGYDVF KTTKLANGVW STPENMGSPV NTAGDDVYFV LSADGKIGYY SSNKEGGFGK QDIYSIRMPA AENEPELALL KGKILDDQTG KPTEASITIT DNATKEIVAR YRSNSETGEY LLSLPAGKNY GIAIEKEGHL FYSENMTLNN TNGFKEYKQD ITLVTIKTSG KIILRNIFFD SGKATIRLES TAELLKLVDL LKNNPTLRIE IAGHTDNIGD ETLNQKLSEE RAKNVVTFLT ANGISAGRLV AKGYGSSQPV APNTTDTGRQ QNRRTEIKIL
|
| |