| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_0416 |
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| Symbol | yiaD |
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| ID | 4185422 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | + |
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| Start bp | 483656 |
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| End bp | 487597 |
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| Gene Length | 3942 bp |
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| Protein Length | 1313 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 638070424 |
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| Product | outer membrane protein |
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| Protein accession | YP_677046 |
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| Protein GI | 110636839 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.541208 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGTATATGC GTTTGATTCA AAAAAACTTG CTGTTTGTTA TTCTCATCAG TTGTCTGATG
AACAGTAATA CGGTAAAGGC ACAGCAGCTT ACATTATTTA ATATTGATAC AACGAAATAT
CCGGTAGTAA AGGCGGATTT TTTTGCGCTG GATAAACTTG AAAACCAGAT AACCACACTG
ACGCGGGAAT CGGTTTCCAT TCATGAAAAT GGAATTGAAC AACAGGTTGT GAAGGTGGTT
AATCCGGCAG CCGTTAAACC AAAATCAATT TCGCTTGTAC TCACCATTGA TATTTCAGAA
TCCATGCAAA AGCAATATAT GCCGCTGGCT AAAAATGCAG CAGCAGCTAT TGTAAATAAG
TTGCCATTGG ATATTTCAGA ATGTGCGGTA ACAAGCTTTA ATGATGTAAG TTTTATCAAT
ACCGATTTTA CACGGGACCG GTTTAAGCTG CTGCAATCCA TACAGACATT AGTTCCTGCC
GGCGGTACGG ACTACAACAA AGGATTTATT AAGTCGAATG CCGGGGGATT GGATATATTG
AAAAAAGGAC TACATGAAAA GGTTCTCATT TTTTTAACCG ATGGGTATGG GGATGTAAAC
CCGACAGAAA TTATTCAACA GGCAAAAAGT ATAGGCGCCA AAGTATATGT GATTACCTTA
GGCATGAGCG CTCCCGAAGA ACTAAAGCGC ATTGTAACAG CAACCAACGG CAGTTATTAT
GAAAACGTTA TTTCTGAACA GGAAATCAAT GCTGTTTATA TGAGTATATT GTACCGGAGC
CAGGGGCTTA CTCCATCTTC TGTAGAATGG ATCAGCACTG CAGGTTGCGG ATATTCAAAA
GATGTTGCGT TCAGTGAAAA AAGGAATACA TTAAAGCAAG CACCCGCTCA GTACAATGCT
CCCGTCAGGC ATACCGTGCG TTTGCGCGCA GATGTAAATA CAATCACCTT CAATACGGAA
ACCAAAGAAA TACCGGTTGC TTTAAAAGCG GTTAATGGAG ATTTTTCTGT TACAGCGTTC
AATTCATCTC ATCCTTTTTT TTCATTAGCT GCACCTGCAT TTCCCCGTAC AATAAAAAAA
GATGAAACTG TAAATGTTAT TGTAACGAAT ACAGGATCTA TAACAGAATT TGTTTCAGGA
AGAATTGAAT TGACTTCTGC GGGCTGCCAA TCAACGTATA TTTATTTTCA GTGTCAGCCG
CCTTCCAGCC AGCCTGTATT AAATCTGGTT GCGCCAAATG GGAAAGAAAC ATTTTACGTC
GGCCAGGATA CGCTGATCCG GTGGAGTGTG CAGCATACAA CAGCTCCTGT AAAAATTTCT
TTCAGCAGCA ACGCAGGAAA AAAATGGATG ATAATAGCCG ACAGCATTAC AACGGGGCAG
TTCAACTGGA AAATTCCGAA TACGCCTGGT ACCGATAATT TAATAAAAGT AGAAGCCGCA
GCAGCAAAAA ATAACGTAAA GCCCGTTTCA AAAGTGGTGT ACGATGGCTT TACGGATATG
ATGAATGCAT ATAATCTGAG CCCGGATGGT TCAAGGTACA TATCGCAGAC CGGAACAGAA
TTGCTGCTGC ATGATACCTA TACCAATGCC ATTATAAATA AAACAAAAAA TACGATCAAA
AAAGGATACT TTATTTTTTC ACCGGATGGA AAGTATCTGT TTATGTATGA TGAAAACCAG
CCAATACGCG TATACGATGG ACATACGTTT GAATTTATAG AAGAGTGGGG GATATTTAAA
AATACCTTAA GCAATTATAT TGAGCCCTAT ATGAGTAACG ATCTCAGCCA GTATGTGGCA
AGAGATACAG ATGGCAGCCT GGGCATTTTC AATTTTAAGA CTGGGGTTAA AATGAAGTCC
GTTGATTTTG TTAAAGGAAA AGAAATAACA GACTTTACTT CCAGCTATAT TGTTTCTCTG
GAAGAAGGCG ATCATAAGGT TTGGGTATGG GATCATAAAA AAGGAATACG CGTGCTGGAA
ATCGCTGCTC CGCTGGAACG TATTGTTAAT GCTGAATTTA ATGCAGATGA AAATGTGCTG
ATTATTCATA CCTGGGGGAA CGATGGAAAA AATCAGAACT TTACCGCATA CGATTTAACC
GGCAAACAAC TATACACCTA TAAAAATACC GATAAAGCAT TCATGTCATT GGATACCTAT
CAGAACTATG CATTATGTTC TGTAGCAGAT AAACCGGCAT TGATTGAAAT GAATACGGGT
AAAATCGTAT TAAGCTATAT GTTATCTGAG CCGGTTAAAT TTGGCTGGTT TGTGCCTTTC
AGTAACGGAA AATATATTTT ATTGACAGGC ACATCTTCCA GTAATGTATA TATGCTGACG
TCTGGTATCG ATGGCTCGAA AGATGCACCT GCACAGGATC AATCGGATGC TGTATTTACC
ATTCTTTCAA TAAAACCTCT TGCAACTAAC ATAGTGTTTC CGGCTGTTTA TAACGGCAAT
AAAAAAGATA CAGTTGTTGC AGCCTGTATT AAGAATAATA CTGCTGTAGA TATAACGGTT
AAGAAAATCT CTATTGAAGG AACAAACGCA GCATCGTTTA AGCTGCTGAA TCCAATCACC
GGATTTACGA TACATCCAAA ATCCAGTCAG GATATTGAAA TCCGTTTTGC GCCTGTTACT
GCAGGCATGC ACCAGGCAAT ATTAACCGTT ATTACATTGT ATGATACTGT TCGTGTTCAA
ATATCCGGAA CAGGAATTAT AAAACCATAT AAGCTGCAGC TGGCTGAACT CAATATGGGT
ACAGTAGAAG TAGGTAAATC AAAAGATACG ACATTCACCC GCCTCCTTAC CAATACCAGT
GCAGGCACGC TATATATCAC GTCTATGCGG TTGGCAGGGC CGGATAAAAC ACAATTCAAA
ATTGTATCTT CAACCACTGC AACACTTGCA TCTGGTGCAT CGGCAGAGAT CAAACTGAAT
TTTTCACCTA CTCAACGAGG AAGAACATCC ACACAGCTTA CTATTGATAT TAAAGATGCC
GTGAATACAC TTACAGTACC TGTGTACGCA GAAGCCTATC TTCCGCGTAA ATATACGGTT
CAGCTTAATT ATATAGATGC TTCGACAAAC ACGGCTACAG CAGCAGCAGT GACCTGTATT
GATCGGCAAT CTAAAAAAAG CATGGAGTCT GCTGTAATCA ATGCTGGTAA AAGTTCAACA
ACGGCTGTAT ATGCTGACCG CATATATGTT TTTACGGTCA CAAAAGCAGG ATATAAAACC
GTTGTTGACA GCGTGAATTT ATTAAAGACA ATTACAGATA ATATACTAAC AAAAGAAATT
ATATTAATTC CGGATGGCCC GTCAACACCT GTTACACGGG TGCTTTCCGG ACATGTTTTT
ATTAAAGGTA CGCAGTCGCC GCTTTGGTCG CATATTTCTT TTTACAGTTC AGTAAATAAA
ACACTGATTA AAAAAATTGA AAGTGAACCC GATGGTACGT ATAACATTAC ATTACCGATT
GGTACGTATG CTGTACAGGT AGAAAAAGAA GGATATGTAA ATGAGAACAC GACACTGGAA
ATCAGTAATG GAACGAACGA TCAGGTTAAA AATTTTGAAT TAACACCAAT CAAAGTTGGG
GAAACAATTC GCCTGCCGCA TGTGTATTTT GCACGGGGAG GTACAACGCT GCTGGAAAGC
AGCTATGAAT CGCTTGATCA GCTGTATACC TTATTAACAG ATAATCCTAC GATGCGCATA
GAGTTATTGG GTTATACCGA CAACCAGGGC GATGCAAAGC TGAATGTACT TTTGTCTGAA
CAGCGTGTAG CGGCTATCAA AGATTATCTG GTAGGGAAGG GCATCGCAGA AACACGAATT
GGCGGTAAAG GATACGGCGG TGCAAACCCG ATTGCCAGCA ACGCTACAGA AGAGACGCGG
CAGTTAAACC GGCGGGTTGA ATTTAAAATT GTAAGTAAGT AG
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| Protein sequence | MYMRLIQKNL LFVILISCLM NSNTVKAQQL TLFNIDTTKY PVVKADFFAL DKLENQITTL
TRESVSIHEN GIEQQVVKVV NPAAVKPKSI SLVLTIDISE SMQKQYMPLA KNAAAAIVNK
LPLDISECAV TSFNDVSFIN TDFTRDRFKL LQSIQTLVPA GGTDYNKGFI KSNAGGLDIL
KKGLHEKVLI FLTDGYGDVN PTEIIQQAKS IGAKVYVITL GMSAPEELKR IVTATNGSYY
ENVISEQEIN AVYMSILYRS QGLTPSSVEW ISTAGCGYSK DVAFSEKRNT LKQAPAQYNA
PVRHTVRLRA DVNTITFNTE TKEIPVALKA VNGDFSVTAF NSSHPFFSLA APAFPRTIKK
DETVNVIVTN TGSITEFVSG RIELTSAGCQ STYIYFQCQP PSSQPVLNLV APNGKETFYV
GQDTLIRWSV QHTTAPVKIS FSSNAGKKWM IIADSITTGQ FNWKIPNTPG TDNLIKVEAA
AAKNNVKPVS KVVYDGFTDM MNAYNLSPDG SRYISQTGTE LLLHDTYTNA IINKTKNTIK
KGYFIFSPDG KYLFMYDENQ PIRVYDGHTF EFIEEWGIFK NTLSNYIEPY MSNDLSQYVA
RDTDGSLGIF NFKTGVKMKS VDFVKGKEIT DFTSSYIVSL EEGDHKVWVW DHKKGIRVLE
IAAPLERIVN AEFNADENVL IIHTWGNDGK NQNFTAYDLT GKQLYTYKNT DKAFMSLDTY
QNYALCSVAD KPALIEMNTG KIVLSYMLSE PVKFGWFVPF SNGKYILLTG TSSSNVYMLT
SGIDGSKDAP AQDQSDAVFT ILSIKPLATN IVFPAVYNGN KKDTVVAACI KNNTAVDITV
KKISIEGTNA ASFKLLNPIT GFTIHPKSSQ DIEIRFAPVT AGMHQAILTV ITLYDTVRVQ
ISGTGIIKPY KLQLAELNMG TVEVGKSKDT TFTRLLTNTS AGTLYITSMR LAGPDKTQFK
IVSSTTATLA SGASAEIKLN FSPTQRGRTS TQLTIDIKDA VNTLTVPVYA EAYLPRKYTV
QLNYIDASTN TATAAAVTCI DRQSKKSMES AVINAGKSST TAVYADRIYV FTVTKAGYKT
VVDSVNLLKT ITDNILTKEI ILIPDGPSTP VTRVLSGHVF IKGTQSPLWS HISFYSSVNK
TLIKKIESEP DGTYNITLPI GTYAVQVEKE GYVNENTTLE ISNGTNDQVK NFELTPIKVG
ETIRLPHVYF ARGGTTLLES SYESLDQLYT LLTDNPTMRI ELLGYTDNQG DAKLNVLLSE
QRVAAIKDYL VGKGIAETRI GGKGYGGANP IASNATEETR QLNRRVEFKI VSK
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