| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_0006 |
|---|
| Symbol | aroE |
|---|
| ID | 4186887 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cytophaga hutchinsonii ATCC 33406 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008255 |
|---|
| Strand | + |
|---|
| Start bp | 4870 |
|---|
| End bp | 5610 |
|---|
| Gene Length | 741 bp |
|---|
| Protein Length | 246 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 638070004 |
|---|
| Product | shikimate dehydrogenase |
|---|
| Protein accession | YP_676640 |
|---|
| Protein GI | 110636433 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0169] Shikimate 5-dehydrogenase |
|---|
| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.171843 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGACAT ACGGTTTAAT TGGATTTCGC TTATCACATT CTTTTTCAAA AAAATACTTT
ACTGAAAAAT TTCTAAAGGA AGGAATTGAA GATTGCGTAT ACGAAAATTT TCAATTAGAT
ACGGTAAAGG AATTTTCAGC ACTGCTTCGT ACAGACGCCA ACCTGAAAGG GTTCAACGTT
ACCATTCCAT ATAAAGAAGA AATCATTCCT TTCCTGAATG ACCTGGATGC TGCAGCAAAA
GAAATCGGTG CGGTTAATGT CATTAAGATT CAGGAAGACG GGACACTGAT CGGATACAAT
TCGGATTATT ACGGTTTTAA AACATCACTC GAAACATTTA TCCCGAAGGA AGTGTCTCAT
AAAGCGCTTG TATTAGGTAC CGGCGGTGCC GCTAAAGCGG TTGTAACAGC GCTTAATCAT
TTAGGCATAC CATATCAGTA CGTTTCACGC AATAAGTCGG CACAAAGCCT CAGCTACGAA
GAACTGGATC AAAATGTCAT GCAGGAATAT ACACTTGTAG TGAATACATC CCCATTGGGC
ATGTATCCGG AGGTTGATTC TTTCCCGGCA ATTCCATATG AATTTTTGGA TAGCAGGCAT
TACCTGTACG ACCTGGTATA TAATCCGGAA GAAACCCTGT TTATGAAAAA AGGAATTGCC
CGGGGCGCAC ACGTGATGAA TGGTTTGCCC ATGCTGATCG GGCAGGCAGA AAAAGCCTGG
GAGATCTGGA ACTCAAAGTA A
|
|---|
| Protein sequence | MKTYGLIGFR LSHSFSKKYF TEKFLKEGIE DCVYENFQLD TVKEFSALLR TDANLKGFNV
TIPYKEEIIP FLNDLDAAAK EIGAVNVIKI QEDGTLIGYN SDYYGFKTSL ETFIPKEVSH
KALVLGTGGA AKAVVTALNH LGIPYQYVSR NKSAQSLSYE ELDQNVMQEY TLVVNTSPLG
MYPEVDSFPA IPYEFLDSRH YLYDLVYNPE ETLFMKKGIA RGAHVMNGLP MLIGQAEKAW
EIWNSK
|
|---|
| |