| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3727 |
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| Symbol | |
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| ID | 4175507 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 4491062 |
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| End bp | 4492462 |
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| Gene Length | 1401 bp |
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| Protein Length | 466 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638056757 |
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| Product | sugar transporter |
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| Protein accession | YP_663283 |
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| Protein GI | 109900028 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | [TIGR00879] MFS transporter, sugar porter (SP) family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGTCTCAAA ATAACGAAAA TACACTGATG ATCATTCTTG TCAGTTGCGT TGCAACGATA
GGGGGATTCC TATTTGGCTT CGACAGCGGC GTCATAAATG GTACGGTTGA TGGATTGCAA
GGTGCATTTA ATTCCGATAA TGCAGGTACT GGCTTCAATG TATCAAGCAT GCTGCTAGGT
TGCGCTGTTG GCGCATTTAG TGCCGGGCGC TTAGCGGATA GATTTGGACG TCGCCCTTTG
CTCATTACAG CAGCCATATT CTTTATTATC AGCGCTTGGG GCTCGGGTGT TTCAACGTCA
TCGATGGAGT TTGTGGTTTA TCGCATTCTG GGTGGTTTAG CCGTAGGTGC AGCGTCAGTC
ATGGCACCTG CCTATATCAG TGAAATTGCG CCGGCGCGTT TTCGTGGCAC GTTGTCATCA
GTGCAACAAG TGGCCATCAT CTTCGGTCTA TTTTCTGCTT TTGTGAGTAA TTACTTTCTC
GCGAATATTG CTGGCTCATC CACTGCCGAG TTTTGGATGG GCTATCAAGC ATGGCGCTGG
ATGTTCTGGA TCGAGCTTAT CCCCGCAACG CTTTTTCTTG TGGCGTTAAT GTTTATTCCA
GAAAGCCCAC GTTATTTGGT GATGAGTAAA AACACTGAAA AAGCCAAGCG GGTGTTAAAC
GCCTTGTACG GCGATGCTCA AGGGCAAACC AAATTGCAAG AAATTGAAGC ATCTCGTGAA
ACGCAAGGAT CTAAGCCGAA GCTGACTGAC TTGATTGACA AGGTGAGCGG TAAAATACGC
CCTATTATGT GGGTCGGTAT AGGTCTGGCT GTATTTCAGC AGTTAGTCGG TATTAACGTG
GTGTTCTACT ACGGCGCTGT TTTATGGCAG GCAGCTGGGT TCTCAGAGTC CGATGCGTTA
ATGATCAACG TGATAAGTGG TGCAGTCAGC ATCGCAGCCG TATTTGTGAC TATGTTCCTG
ATTGATAAAG TCGGGCGCAA ACCCTTCTTG TTGATTGGTT CTGTGGGCAT GACATTTGCT
CTTGGCACCA TGGTGTACAT TTTTGCTAAC TCCGGCCTTG ATGCTAATGG CAACTTGAGT
TTGGGAGATC AAGGCGTAAT CGCACTTATT GCCGCAAATG CTTATGTGTT TTTCTTTAAC
CTGTCTTGGG GCCCTGTGAT GTGGGTGATG TTAGGGGAAA TGTTCCCTAA TCAAATCCGT
GGTTCTGGTT TGGCCGTGGC AGGCTTTGCT CAGTGGGGCG CTAACTTTAT AGTGACCTTC
ACCTTCCCTA TATTTTTGGC TTCTATCGGG CTAGCAGGCG CGTACAGTAT ATACGCACTC
GGCGCTTTGA TATCCATTGT CTTTGTGTTC AAGCTAGTAC AGGAAACGCG AGGCAAAGAG
CTGGAAGAAA TGCAAGGCTA A
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| Protein sequence | MSQNNENTLM IILVSCVATI GGFLFGFDSG VINGTVDGLQ GAFNSDNAGT GFNVSSMLLG
CAVGAFSAGR LADRFGRRPL LITAAIFFII SAWGSGVSTS SMEFVVYRIL GGLAVGAASV
MAPAYISEIA PARFRGTLSS VQQVAIIFGL FSAFVSNYFL ANIAGSSTAE FWMGYQAWRW
MFWIELIPAT LFLVALMFIP ESPRYLVMSK NTEKAKRVLN ALYGDAQGQT KLQEIEASRE
TQGSKPKLTD LIDKVSGKIR PIMWVGIGLA VFQQLVGINV VFYYGAVLWQ AAGFSESDAL
MINVISGAVS IAAVFVTMFL IDKVGRKPFL LIGSVGMTFA LGTMVYIFAN SGLDANGNLS
LGDQGVIALI AANAYVFFFN LSWGPVMWVM LGEMFPNQIR GSGLAVAGFA QWGANFIVTF
TFPIFLASIG LAGAYSIYAL GALISIVFVF KLVQETRGKE LEEMQG
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