Gene Patl_3670 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_3670 
Symbol 
ID4175450 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand+ 
Start bp4426818 
End bp4427411 
Gene Length594 bp 
Protein Length197 aa 
Translation table11 
GC content47% 
IMG OID638056700 
ProductTetR family transcriptional regulator 
Protein accessionYP_663226 
Protein GI109899971 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.411004 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCTAATG TTTCAAAATT CAATAGGACA GACGTGCTTG AAAAAGCCAC TCAGTTATTC 
TGGGAGAGGG GCTATGTAGG CACCTCGACC CGTGAATTAC AAAGTGCGCT TGATATGCGA 
CCCGGCAGTA TTTATGCCGC ATTTGGCAGC AAAGCCGATT TATTCGCTAG CGTACTCAAT 
CATTACGCAC AAGCACTGAC AGAACAACTG AACACGCAAG TGATGAACAA TGCGAACGCT 
CTACAAGCGT TCCAGCAACT GATCCACGAC CTGGTGTTAT GTCCAAATAG CACTAGACCG 
AGCGAAATGT GCATGCTGGC TAAAACGCTG GCAGAGCTCG ATGAAAGCCA TCGTGAAATA 
TTGAGTTTGG TACGCACTTT ACTCAATCAA GTCGAGGCCA AGTTTGCAGA CGTGTTTACT 
AAAGCAAAAG AGCAAGGTCA ATTACCAGCT AACACCGATG TCGTCGCAAC GGCCAGAACT 
CTGCAGATAA GCATTATCGG TTGGCGTTCT TATCTCAAAG CGACAAGAGA CACTCAAGTT 
GTGGAGCAGC AAATTGAGCA GCTTTTTCAG CAGCTCACCC ATCCTATACA CTGA
 
Protein sequence
MANVSKFNRT DVLEKATQLF WERGYVGTST RELQSALDMR PGSIYAAFGS KADLFASVLN 
HYAQALTEQL NTQVMNNANA LQAFQQLIHD LVLCPNSTRP SEMCMLAKTL AELDESHREI 
LSLVRTLLNQ VEAKFADVFT KAKEQGQLPA NTDVVATART LQISIIGWRS YLKATRDTQV 
VEQQIEQLFQ QLTHPIH