| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3441 |
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| Symbol | |
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| ID | 4175218 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 4127662 |
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| End bp | 4130193 |
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| Gene Length | 2532 bp |
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| Protein Length | 843 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638056472 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_663001 |
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| Protein GI | 109899746 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00117935 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAAAA CACATACCTT CAAAGCCAAA GATCAGTGGT TAAAAGTCGC ATTAATGATG
AGTGCATCAT CTGCAATTTT GAGCGGAGCA AACGCTTACG CTCAGGAGCA AGCGACTGAA
GCTGCAGATG ATTTAGAAAC AATCAGTGTT ATCGGTTCAC GTCGATTAGG GCGCACGGTT
GAAGATAGCC CGGTGCCTAT CGACATCATT GGTGCCGATT CACTTAGCAC TACTGGGCAA
ACTGAAACCA ATATGATTCT GGGCAACTTG TTGCCAAGTT TTAACTTTCC TCAACCGTCA
TTGACCGATG GAACCGACCA CGTTCGACCT GCACAACTGC GCGGTTTAGC GCCGGATCAC
ACGCTAGTAT TGGTAAACGG TAAGCGTCGC CATTCAAACG CGCTGCTTAA CCTTAATGGC
TCCACCGGGC GTGGTTCGTC AGCGGTCGAC TTAAATGCGA TCCCTGCTAA CGCCATTGAG
CGTATCGAAG TATTACGCGA TGGCGCAGCA GCGCAATATG GCTCTGATGC GATTGCAGGG
GTTATCAACA TAGTATTGAA AAGTGCCAGC AGCGGTGGCT CGGCGTCAGT CACGTACGGT
GCGAACGTAA CGACCATGGA TGGTGTGCCT GATTTAAAAG ACGTCGGCAT TGATGATAAC
GGCGAGCTTG CCTTTACCGA AGGTGGCGAT CGCGAATTAA CCGATGGTCA AACCGCTACC
ATGCGTGCCA ACATGGGGTT TGCGCTAGGG GATGACGGTT TCTTTAACCT GTCAGCTGAA
TTTCGTGATC GCAGCGCCAG TAATCGCTCT GATTATGATC AACGAGAAAA CTATTCGCGT
TTAGAAGATG GCTCGTTAGA TCCCCGCGAA CTCACATGGG ATCGCTACAA TCATAACTTT
GGCAATGGCG ATGTTGAAGA CATGGCGGTG TTTTATAACG CGGGCTTTGA GCTAAACGAG
AACGCAGAAA TATATTCATT TGGTTCGTAC AGCACCCGTG AAGGGGAAGG TGGAGGTTTT
TATCGCCGTG CCCAAGACAG CCGCAACATC GAAGCGATTT ATCCCGATGG CTTCTTACCT
ATTATAACCT CTGACATCAA TGATTATTCA TTTGCCACGG GTGTAAAAGG GTTTATGAGT
GATTGGAACT ACGACCTCTC TGCCGTATAC GGTGAAGATG AGTTTGAGTT CGGCGTGAAA
AACAGCTTGA ACACCTCTCT AGGGCCAACG AGCCAAACGG TGTTTGATGC TGGTACGCTG
ATTTACGACC AACTGACCAT TAACCTAGAC CTTAGCCGCG AAATTGATGT GTCTGGCCTA
GCCAGTGGCG TCAACGTGGC GGTAGGTGCT GAATATCGCC GTGAAGGCTA CGAAATTGAA
GCCGGTGAAG AAGCATCTTA TGTTCAAGGT ACCTTTGGTG GCTCTGCGGG CTCACAGGTA
TTTCCTGGCT TTACCCCCGA ATCAGCCGGT GACAACAGCC GTCACAACGT CAGTTTATAC
GTGGATTTAG AAGCCTATAT TACGGACAAC TGGAATGTGA CTGTAGCTGC TCGTTATGAA
GATTATTCTG ACTTTGGCTC AACGGTAAAC GGTAAGTTCG CCACCCGTTA CACGCTGACA
GAAGAAATAG CTCTGCGGGC GTCAGTGTCC ACTGGCTTTA GAGCGCCATC GTTGCAGCAG
CAGTATTTCA CTTCTATCGC GACGGTATTT GTAGACGGTG AACCAACTGA AACTGGCACG
TTTGCACCCA ACAGTGATGT GGCAAAAGCG TTAGGCTCAC CTGGATTGGA TGCAGAAGAG
GCGGTGAACT ACGGCGCGGG TATTACCTGG TCACCAGATT CAAACTTCAG TGTGTCAGTG
GATTACTACA ATATCAAAAT TGACGATCGT ATTGTGTTGT CCAATAACTT GTCCGGTGAG
GGAATTGAAA CCTTACTAGC AGGTACGGGG GCAAACCGTG CGCGCTTCTT CTTGAATGCC
ATTGACAGCG AAACATCAGG GGTTGATGTG GTGGCGTCAT ACAATACTGA TATTCAAAAC
TGGGGTGATG TGGCCTTTAA TGCGGGCTTT AACTACAACA AAAATGAAGT GACTGACATC
ATCGACCCAC CTGCGGTACT TGCTGGTGCT GGCGTGGATC AAGGCAACTT GTTCTCGGAT
GTTGAATTGC GTCGTTTTGA AGTGGGCTCA CCAAAAACCA AGCTCAACTT AAGTGCCGTG
TGGACCATGG ATGAGTGGCA CGCAACACTG CGCACAACGC GCTACGGTGA AACGCAAGAG
CCATCAAGTG ACCCAGCTAC CAATGAAGTA TTGCCCGAAA AATGGGTCAC AGATTTGGAC
GTTGGTTATG ACGTAACAGA CAACCTAACG CTAACATTAG GGGCGAACAA CTTATTTGAT
GTTTACCCTG ATACTACCCG TGAATTGGTG GAAGATGTGG GTACGTTCTC ACGCTTATTC
CCTTATTCAG GGTTTTCACC GTTTGGTTTC TCAGGCCGTT TTGTTTACGG TAAGGTATCT
GTCACGTTCT AA
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| Protein sequence | MKKTHTFKAK DQWLKVALMM SASSAILSGA NAYAQEQATE AADDLETISV IGSRRLGRTV
EDSPVPIDII GADSLSTTGQ TETNMILGNL LPSFNFPQPS LTDGTDHVRP AQLRGLAPDH
TLVLVNGKRR HSNALLNLNG STGRGSSAVD LNAIPANAIE RIEVLRDGAA AQYGSDAIAG
VINIVLKSAS SGGSASVTYG ANVTTMDGVP DLKDVGIDDN GELAFTEGGD RELTDGQTAT
MRANMGFALG DDGFFNLSAE FRDRSASNRS DYDQRENYSR LEDGSLDPRE LTWDRYNHNF
GNGDVEDMAV FYNAGFELNE NAEIYSFGSY STREGEGGGF YRRAQDSRNI EAIYPDGFLP
IITSDINDYS FATGVKGFMS DWNYDLSAVY GEDEFEFGVK NSLNTSLGPT SQTVFDAGTL
IYDQLTINLD LSREIDVSGL ASGVNVAVGA EYRREGYEIE AGEEASYVQG TFGGSAGSQV
FPGFTPESAG DNSRHNVSLY VDLEAYITDN WNVTVAARYE DYSDFGSTVN GKFATRYTLT
EEIALRASVS TGFRAPSLQQ QYFTSIATVF VDGEPTETGT FAPNSDVAKA LGSPGLDAEE
AVNYGAGITW SPDSNFSVSV DYYNIKIDDR IVLSNNLSGE GIETLLAGTG ANRARFFLNA
IDSETSGVDV VASYNTDIQN WGDVAFNAGF NYNKNEVTDI IDPPAVLAGA GVDQGNLFSD
VELRRFEVGS PKTKLNLSAV WTMDEWHATL RTTRYGETQE PSSDPATNEV LPEKWVTDLD
VGYDVTDNLT LTLGANNLFD VYPDTTRELV EDVGTFSRLF PYSGFSPFGF SGRFVYGKVS
VTF
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