| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3362 |
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| Symbol | |
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| ID | 4175139 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 4031294 |
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| End bp | 4035037 |
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| Gene Length | 3744 bp |
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| Protein Length | 1247 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638056393 |
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| Product | ATPase |
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| Protein accession | YP_662922 |
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| Protein GI | 109899667 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG5271] AAA ATPase containing von Willebrand factor type A (vWA) domain |
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| TIGRFAM ID | [TIGR03504] FimV C-terminal domain
[TIGR03505] FimV N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.592552 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATTTGC GAACGCTAGC CCTCTTATTT GTAGCGAGCC TCACCTTAAA CTTCTCTATT
GGTTTACACG CAGCCGATTT TCAGCAAATC CGTATTAAAG GTCCCAAAAG CAGCGATTCC
GATTATTCAG GTCAAACATA TGGCCCAATA ACGGCCGCTG ACACACTTTG GCGTATTGCA
AGCGATGCAA GACAGAATAC CAATCACTCC ATATATCAAG TGATGCTCGC GACCTACGAG
CTTAACCCCG ATGCTTTTGA ACGCAATAAC ATAAACCTGA TGAGAGACGG GGCTATTTTG
CGCCTACCAG CGTCTCAGTA TGTGAATAGG GTAAACGAAG CTCAGGCTAT TTCAAAAGTG
CGCTACGACA ATCAGCTACT TAATTTAGGT GGCGAAACTC TTGGCGATGG CGCAACAGGT
AACGTCAATA AAAAATTAGC CAGTAAAGAC GATTTAGACG AAACCAAAGA CATAATTGAA
AAACGTTTAG GTGCTATCGA TGAGGAACAA AATCGTCAAT TTCAAGAAAT TCGGCAACAA
TTTGCCGAGT CTATTCTCAG CGTTCAAACT ATTCTCAATG AAAACCAGCG CGTTTTCGAA
AGCCTTGATT CGGTTAACAA AGACTTAGCA GAAATTCGCA GTCAAGAAGA AATCCGAGAC
GAACAAATGT CGCAAATGGG CAAGAGCATT GAAGAGCTTC TTGCTAAATC ACGTGATGCT
GAGGCCAAAG CGTTGGCACA GCAGCAAGAA GGCGGTTTCA CAGACTGGCT GATGAAACCA
CTGACCTTGA TTATCTCCTC TATCTTAATT TCTTTGCTTA TCTTAGGTGG TTTTGCTTTC
TGGCTAATGA AGCGTAAAAA GCCGCAGGAG ATGGATCTAG ACTTATTGGC GACAAAAGAT
GAGCCGGCTG ATACTTACGT GGCCAGTGAG ATGGATGATC TGTCTGATGC ATTGAGCGAA
GAATTAACTT CGGAATTAGA TGACGATAAT TTATTTGGCG AACAAGATGT TCCCGACGAT
GTATTAGCAG AAGAGCTGAA AGACTCATTT GACGACACGC AAGAGTTAGA TGACACATCA
GAACTTGCTG GAAAGGAAGA ATTCGATGAT CTTGGCGATG ATATGTTGGT GCCAGATAGC
GAACTCAACC CGACAGAAGA GTTTGAAGCA GGAAGTGACG AACTTGACCA AGATGATTTA
GACAACCTAT TCGAAGATGA AGACGATCTG TTGGCTGAAA TTGATGAAGA AATGGATAAC
ATCAGCCTGT CTGATGAAGA TAAGGAAGAA ATTCAGGCTG ACGCGCAAGA AGCCGAAACT
GAGAAGGTCG AAATAGACGA CACGCAAGCA CAAACTCCTG AACCTGAAAA CACTGAGGAG
TCGAGCGCCT CAGACGACGA AGAGTTTGAC TTTGATATAG ATCTCGACGA GTCGGCGAAA
GTAGAGAGCG CAACCGAAGC CGAAATTGTT GAAGAGCTAG GGGATGAAGA CTTAGATTTA
GACGATAACG AGTCGGATGA TCCGGACGTC GAAGCCACTG GTGATGCATC TAACGAGCTA
TTACAGGAAA CATCAAGCGA GGCTAGTGCA GTCTCCCAGG TAGATGACAG TGATGAGCAA
CCTGAGATCA GTATTGATGA TTTACTCGTT GAGCCTAAAC CTGAATTACC AGAATCATCT
GAAGTAAATG CAGATGATCC TATCAATGAA GATATGCTCG AGCAACTCGA TAAAGAAATT
GCATCGCAAA GTGAAGAGCT AGACAACATC ACCAGCAACT TGATTGATGA ACTTGAACAA
GTCGAGATGA TGCAGGATAT GCTCCCCGAC GAAGAGGATG CATCCGAGCC AGAATTTACC
GGTACGCCGC AACATGATAT TCAGGAATTA GACAAGATTA CAGAAGGGCT AGGCGATATC
TTTGCTGAAG CTGATAGCCA TGAGTCTGAA AAAATTGAAC ATGATGTTGA AAATCTGTCA
GTAGAAGATT TGAAGTCAGC AGATGAAGAG TTTGGGACTG AAGTTGAAGA GCCAACGCTG
ACCGATGAGC AGGCCGACGA GTTCGAAACA GAAGAATCAG CGCTCTCAGA AGAGGAAAAT
TTACCAGAGG AATCACAGCC TCTAGAAGAG GATTTAACCC CAGAGGCGGC AAACACTGAA
GAATCAGAAG ATGAAGAGTC GACGCAGACA GCTGAGCAGG CTGACGAGTT TGTAACAGAG
GGATCACAGC CTCTAGAACA AGAGTTAACC CCAGAAGTAG CAGACGCTAA CGAGTCAGTA
GACGACTCCG TAGATGACTC CATAGGTGAA AAACGGACAA CAGAAGACGA GCTGCTTGAC
GAGTCTGGGA CAGACCATGA AGAACCAACG CAGACGGTTG AGGAGGTCGA CGAGTTTGTA
ACAGAGGGAT CACAGCCTTT AGAAGAAGGT CTAACCCCAG AAGCAGCAGA TGTTGACCAG
TTAGTAGATG ACTCAGTAGA TGAAAAGCCG GCGACAGAAG ACGAGCCGCT TGAAGAGCTT
GCAGCAGATA AATCAGAGTT GTTAGAAGAG GGCACATTGC CTGAGGCAGC AATTGCTGAC
GAATTAATAG ACGAACCTGC AGAAGAAGAG CCAGGGAAAG GCGATGAAGC ATCGACGCCG
ATAGCTGAGC AGGCCGACGA GTTTGTGACA GAGGAGTCAC AGCCGTTAAC AGAGGAAACC
GCATCTAAGG CGACAGCCGC TGACGAATCA GTCGACGAGG CAGAAGATGA AGAGCTGGAA
TTAGATACTG AATCAGATGT TCTCGATGAA GATAATGCGT TAGAGCAAGC ACTTGCTGAT
TTCGATGAAT CGATAGCTGA GGCAAATGAC GAACCCTCTC AAGCGGGTGA AAGCGACACC
TTGTCTGATC CTATGGATTT GGATGATATA GATGGCTTGA GCGATTTTGA TGACGGTGAA
TTAGAAAAAG CACTTGCAGA TTTTGACGAC GATGGGCCTG AAACCAGTGT ACAGCCATCT
CAGTCTGAGG AAAGTGAGCT GTCATCCGAT GCAATGGATT TAGACGACAT AGATGCCATA
GGTGATTTTG ATGATGATGA GTTAGAGCGT GCGCTAGATA ATTTTGTTCT AGACGATAAC
TCTAGCAATA GCGCAGCGTT ATCTGATAAC GAATCATTAG CACCGTCCTT TGATAAAGAC
AGTGAAGAGT TAGATGAATT CCCTGAACTA GGGGACTGGT TAAACGAAGT AGATGAAGAC
GACAAAGGGG CCATCGAGAA CCTAGAATCC GGCTCATTCG ATGACATGTT GCAAAGTTTA
GATGAAGATT TGGGCGACGC CATTTCTGCA ACGACCGAAA ACACGCCGTC ACCCAGCAAT
ACCAATCAAG CCGGACAGGA TATTGACGAC GCGGTGGACA TCGCAACCTT ACTGGAAGAA
AGCGATCCCC ATGAACAAGA GCGCGATTTT CTGGACGTTG ACGACTTGCT TAATGACAGT
ATCACGGCGG ATCCCTCACC GGAAAAAGCG CTAGATTTAG AGTCTGTGAT GGGGGAGTTT
TCAGGGGCAC AAGGCGACGT TGATCATATT GACGTGGACA GTGACGACGG CTTTGGCGCT
AAGCTTGATT TGGCGCATGC CTATATCGAA ATAGGTGAGA CAGAATCAGC TACGGAGCTA
CTTGAAGAAA TCATCGAAAA CGGACACCCC CCGCAATCAG ATGAAGCTAA GCGTGTGCTG
GCTAGCCTAT CCGAAAATGA CTAA
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| Protein sequence | MNLRTLALLF VASLTLNFSI GLHAADFQQI RIKGPKSSDS DYSGQTYGPI TAADTLWRIA
SDARQNTNHS IYQVMLATYE LNPDAFERNN INLMRDGAIL RLPASQYVNR VNEAQAISKV
RYDNQLLNLG GETLGDGATG NVNKKLASKD DLDETKDIIE KRLGAIDEEQ NRQFQEIRQQ
FAESILSVQT ILNENQRVFE SLDSVNKDLA EIRSQEEIRD EQMSQMGKSI EELLAKSRDA
EAKALAQQQE GGFTDWLMKP LTLIISSILI SLLILGGFAF WLMKRKKPQE MDLDLLATKD
EPADTYVASE MDDLSDALSE ELTSELDDDN LFGEQDVPDD VLAEELKDSF DDTQELDDTS
ELAGKEEFDD LGDDMLVPDS ELNPTEEFEA GSDELDQDDL DNLFEDEDDL LAEIDEEMDN
ISLSDEDKEE IQADAQEAET EKVEIDDTQA QTPEPENTEE SSASDDEEFD FDIDLDESAK
VESATEAEIV EELGDEDLDL DDNESDDPDV EATGDASNEL LQETSSEASA VSQVDDSDEQ
PEISIDDLLV EPKPELPESS EVNADDPINE DMLEQLDKEI ASQSEELDNI TSNLIDELEQ
VEMMQDMLPD EEDASEPEFT GTPQHDIQEL DKITEGLGDI FAEADSHESE KIEHDVENLS
VEDLKSADEE FGTEVEEPTL TDEQADEFET EESALSEEEN LPEESQPLEE DLTPEAANTE
ESEDEESTQT AEQADEFVTE GSQPLEQELT PEVADANESV DDSVDDSIGE KRTTEDELLD
ESGTDHEEPT QTVEEVDEFV TEGSQPLEEG LTPEAADVDQ LVDDSVDEKP ATEDEPLEEL
AADKSELLEE GTLPEAAIAD ELIDEPAEEE PGKGDEASTP IAEQADEFVT EESQPLTEET
ASKATAADES VDEAEDEELE LDTESDVLDE DNALEQALAD FDESIAEAND EPSQAGESDT
LSDPMDLDDI DGLSDFDDGE LEKALADFDD DGPETSVQPS QSEESELSSD AMDLDDIDAI
GDFDDDELER ALDNFVLDDN SSNSAALSDN ESLAPSFDKD SEELDEFPEL GDWLNEVDED
DKGAIENLES GSFDDMLQSL DEDLGDAISA TTENTPSPSN TNQAGQDIDD AVDIATLLEE
SDPHEQERDF LDVDDLLNDS ITADPSPEKA LDLESVMGEF SGAQGDVDHI DVDSDDGFGA
KLDLAHAYIE IGETESATEL LEEIIENGHP PQSDEAKRVL ASLSEND
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