Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_2402 |
Symbol | |
ID | 4174150 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 2923229 |
End bp | 2925403 |
Gene Length | 2175 bp |
Protein Length | 724 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 638055413 |
Product | TonB-dependent receptor, plug |
Protein accession | YP_661972 |
Protein GI | 109898717 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000227129 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCACTTTT TCATGACCCT AAATGGATAT TCAATGCGGT ACACCTGTTT AACACCTATC AGCTATTTAT CAATCCTCAG CGTTTTAGTT AGCACAGCAC TTCAGGCTCA AAGTAACACG CAAAACGATA ACCCAACTAT CGAGCGTATG ATAGTGACGG GTAGCCGTAT TATGGAGAGC ATTGATGAAG TGCCAGCATC AATCGTGATC ATTACCCAGC AACAAATTCA AGATCAGTTA AAAGTAACCA GTGAGTTACA GTCTCTACTA TCAACACTTG TTCCAGGTCT AGCACCATCA ACTGGCACGT CTAGTAATTC AAGCCAAACA CTACGAGGCC GCGCCCCCTT GATCATGATT GACGGCGTGC CTCAGTCCAC ACCATTACGC AACGGTTCAT TGGGAGTACG CAGTTTAGAT GCTAGCACCA TTGAGCGTAT CGAAGTCATT AAAGGGGCAA CCTCGGTATA CGGCAACGGC GCTGCTGGGG GGATTATCAA CTACATCACT AAAAAAGCGG CCAGTGATAA AGCGATGGCC GGTCACGTTA CCATTTCTTC ACGTTTTAGT GCGGTAAAAC TCGAAGACAC CTTAGGTAGT CGGGTGGATG CGGGCATGAA TGGGCAGCTA AATAAATTTA GCTATGTACT TAATGCAAGC TATGAAGAAA ACGGCGTTCA ACGGGATGCA CAAGGCGATA TTCTCGGTCT AACTTATGGG CTATCGGATA CTAATTCGCA AAATTATTTT ACTAAATTTG GTTATCAGTT TGATGACGAG AAGACGCTAC AACTGACCTA CAATTATTTT AAGTCAAAGC AAGATACTGA CTTAATTAAT GTGGTTGGCA ATATCAATTC AGGCGATAAA ACGTATGCTA TTGAATCCCC CGACGGCTCG TCTATCGTCG GTGAACCTCA AGGCCCAGAA AACCACAATG TCATGCTTAA GTACTCAGAT GACGAGATAT TTAGTCAAAC CCAATTAGTG GTCGATGCAT ACACCCAGCG GATTGAAAAT GTTTTCTTCT TTTCGACAAA TCTAGCCAAC CCAGAACAAG GATTTGATGG AGGCCAATCC ATTATAGAGT CTGAGAAAAA AGGCCTACGG GCCACATTTA ACAGCCAGTT TACCTTGCAG GACATTGATA CCACGTTAAT TTACGGCATC GACGCATTAA ACGATGTTAC CTCACAGCCA TTAGTCGACG GCCGTGTATG GGTGCCTGAA ATGGATATGG AAAACATCGC TGGGTTCGTG CAAGGCAAAT GGATTGTAAA TGATGACATT ATTATCAAAG CCGGCGTTCG TCATGAAAAC ATTGATTTAA AAGTGGCTGA TTTTAGCACC CTTCGCTTGT GCCGCACGGC CGACCAATGC TCAGTCGCCT TTGACGTCGT CGGTGATACC CTCAATTACA AAGCCACTAC CTACAATGCA GCCATTCGCT ATAACTTAAG TGATGCATTT AGACCCTTTA TCAGTTATTC GCAGGGCGCA GACATATCAG ATACCGGCCG CCTGCTGCGC ACTGCAACCG TCACAGACAT CGCCCTTATT CGTACCCAAG CCTCAATTAT TGATAACTAC GAACTCGGTT TTACGTCTGA AATCGACGCC CTACGCGTCG AGTTTTCCGC CTATCGCAGT ACGTCAGAGT TAGGCACGAC AAATTCTTAT GATGCTGAGA CCGGGGTATA TTTACCCGTT CGTGCCCCAC AAGAAATATA TGGCTACGAA GCGTTGGCCA CTTATAAAGT GCAGTCCAAT TTAGACCTGT CAGCGACTTA CTCTTGGGTT GAAGGTAAAA ATACTGAATT AGATGTGTAT TTAGGAGGTA AAGATATTGG TGCTCCAAAA GGCACCTTTA ATGTAAATTG GCAACCCGTT GATGGTGCTC GCTTGGCACT AAATTACTTA TACGTAGGTT CACGAAAACG CTTTGGTCAA GTTGATGGCG AATATATTGG CGATCAGGGG CCGGTTGATA GTTACCAGTT GATCAATATT AACGGCAGTT ATGATTTAGG TAATCAATGG CAAGTATTTA TGGGCATTGA GAATCTGTTG AACAATGATT ACTACCCTGC TCGCTCACAA GTCTATACCT ACGACGGATA TAACCACAAA GGCTTAGGAA TGACCGTTAA CTTTGGCGCG ACTTACCAAT TTTAA
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Protein sequence | MHFFMTLNGY SMRYTCLTPI SYLSILSVLV STALQAQSNT QNDNPTIERM IVTGSRIMES IDEVPASIVI ITQQQIQDQL KVTSELQSLL STLVPGLAPS TGTSSNSSQT LRGRAPLIMI DGVPQSTPLR NGSLGVRSLD ASTIERIEVI KGATSVYGNG AAGGIINYIT KKAASDKAMA GHVTISSRFS AVKLEDTLGS RVDAGMNGQL NKFSYVLNAS YEENGVQRDA QGDILGLTYG LSDTNSQNYF TKFGYQFDDE KTLQLTYNYF KSKQDTDLIN VVGNINSGDK TYAIESPDGS SIVGEPQGPE NHNVMLKYSD DEIFSQTQLV VDAYTQRIEN VFFFSTNLAN PEQGFDGGQS IIESEKKGLR ATFNSQFTLQ DIDTTLIYGI DALNDVTSQP LVDGRVWVPE MDMENIAGFV QGKWIVNDDI IIKAGVRHEN IDLKVADFST LRLCRTADQC SVAFDVVGDT LNYKATTYNA AIRYNLSDAF RPFISYSQGA DISDTGRLLR TATVTDIALI RTQASIIDNY ELGFTSEIDA LRVEFSAYRS TSELGTTNSY DAETGVYLPV RAPQEIYGYE ALATYKVQSN LDLSATYSWV EGKNTELDVY LGGKDIGAPK GTFNVNWQPV DGARLALNYL YVGSRKRFGQ VDGEYIGDQG PVDSYQLINI NGSYDLGNQW QVFMGIENLL NNDYYPARSQ VYTYDGYNHK GLGMTVNFGA TYQF
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