Gene Patl_2316 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_2316 
Symbol 
ID4172470 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand+ 
Start bp2819182 
End bp2819853 
Gene Length672 bp 
Protein Length223 aa 
Translation table11 
GC content42% 
IMG OID638055325 
Productpeptidase C39, bacteriocin processing 
Protein accessionYP_661887 
Protein GI109898632 
COG category[R] General function prediction only 
COG ID[COG3271] Predicted double-glycine peptidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.543976 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGACTTT TACTTTGTTT GTTACTGTTA TTGACCACTT CCCCCGCTTG GGGCGGCCTA 
GTCGATTTTA ACGGCCAATT TTCGATTAAA GTTTCCAGTA TTGCCGAGCT ACGCTTTAAA 
ACCATTTACA AACAACAATA TGACTTCAGC TGCGGCTCGG CCACGTTAGC AAGCTTATTA 
TCGTTTCATT ACGACGACCA AGTGAATGAA TTAAGCGTGT TTAAAGACAT GTTCGCACAT 
GGCAACAAAG AAAAAATTAA GCATCAAGGG TTTTCTCTAC TCGATATGAA ACACTATCTG 
ACTCGTCGAG GCTATAACGC AAATGGTTTC AAAATCACTC TCAAACAACT AGCCAGTGCG 
CAGCTTCCTG CCATCACAAT TATTAATAAC AACGGTTACA TGCACTTCGT GATCATCAAA 
GGCAGTAATG ACTCCGAGGT GCTAGTGGGT GATCCAGCAG TTGGTATTAA GTCGATAAAA 
ATAGATGCTT TTCAACAGAT GTGGGGAGAC CGAATTGTGT TTGTAATACA AGATCGAAAG 
GACATAGCCG TTAATCATTA CAAGAACGAT CAACAAAACG ATCATCTCGT TAGGGCAAAC 
TTAGGGTTGG CCATCGACCA TGCCAGCCTA GGGCTATTTA ACGTATTGCA GCCATCCAGC 
GTCGACTTTT AA
 
Protein sequence
MRLLLCLLLL LTTSPAWGGL VDFNGQFSIK VSSIAELRFK TIYKQQYDFS CGSATLASLL 
SFHYDDQVNE LSVFKDMFAH GNKEKIKHQG FSLLDMKHYL TRRGYNANGF KITLKQLASA 
QLPAITIINN NGYMHFVIIK GSNDSEVLVG DPAVGIKSIK IDAFQQMWGD RIVFVIQDRK 
DIAVNHYKND QQNDHLVRAN LGLAIDHASL GLFNVLQPSS VDF