Gene Patl_2117 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_2117 
Symbol 
ID4173372 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand- 
Start bp2565898 
End bp2566527 
Gene Length630 bp 
Protein Length209 aa 
Translation table11 
GC content47% 
IMG OID638055125 
Productthymidylate kinase 
Protein accessionYP_661689 
Protein GI109898434 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG0125] Thymidylate kinase 
TIGRFAM ID[TIGR00041] thymidylate kinase 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.0678723 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGATACACC CAGGTAAATT TATTGTCATT GAAGGATTAG AAGGAGCGGG CAAAAGCACC 
GCTGTCAGTA TCGTGAAATC CTGCATAGAG CAAGCTGGGC ATAGTTTAAC CTGCACTCGT 
GAGCCAGGTG GAACGGCTAT GGCTGAGGCC ATTCGTGAAT GTGTTAAAAA AGATTGGCCA 
AACGAAACGG TAACCACAGA AGCTGAACTG TTACTTATGT ATGCTGCCCG CGCTCAGCTG 
CTGCACAATG TTATTCACCC TGCATTAACG TCAGGATCTT GGGTGCTGGG CGATCGACAT 
GATATGTCAT CCCAAGCCTA TCAAGGCGGA GGGCGTGAAA TACCCCAAAC ATTGATTCAA 
CCTCTGCGTG ATATTACCTT GAAGGGGTTC GTGCCTGACT TCACCTTATA CTTAGATGTT 
GAACCAAGTA TAGGCTTAGC ACGTGCACGA GGCCGTGGTG AGTTGGATCG CATAGAACAG 
CTTGATATAT CCTTTTTTGA GCGTACCCGT GCACGTTATC TCAGCTTGGC TGAGCAAGAT 
GAGAACTGTG TTGTCATAGA TACAATGCAG TCAATCGAGC AAGTGCACCA CGATATTCAA 
CACGCCATGC AACAGTTTTT GGCGGTGTAA
 
Protein sequence
MIHPGKFIVI EGLEGAGKST AVSIVKSCIE QAGHSLTCTR EPGGTAMAEA IRECVKKDWP 
NETVTTEAEL LLMYAARAQL LHNVIHPALT SGSWVLGDRH DMSSQAYQGG GREIPQTLIQ 
PLRDITLKGF VPDFTLYLDV EPSIGLARAR GRGELDRIEQ LDISFFERTR ARYLSLAEQD 
ENCVVIDTMQ SIEQVHHDIQ HAMQQFLAV