| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1520 |
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| Symbol | |
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| ID | 4172969 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 1825402 |
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| End bp | 1828569 |
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| Gene Length | 3168 bp |
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| Protein Length | 1055 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638054529 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_661096 |
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| Protein GI | 109897841 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATCAC ATCAGTCGTT TAAACTCAGC TCCCTTGCTT GCAGCATTAT GCTCATGCTG
CAAACAGGGA ACAGTTTTGC AGCTCAAACA CAGCAACAGA ACATAGACAT ACCCGCACAA
AAACTCGATG CGGCATTGCT CGAACTCGCC GAAGAAAGTG AAACGCAAAT TTTGTTTTCT
TCTGCCATTA CCCCAGATAT TACCACTCGT GGCATATCAG CCACGTTATC AGTAGACGAC
GCCTTACGTA TTTTACTTGA AAACACCTCG TTAGAGTTCG TTAAGCGCTC TGCGGATACG
TTTATCATTC GCGAAAAAAA CAAGAGCACC TCATCAAGCT CCAATACATC AGAGACTATT
GAGCCTGTTG AGGCAGTAAA AAGCGCTGCA GGTACACCAG CAAAAAAGGC TGATGGCGAA
GCCAGTGTTG AGCGCATCAA AGTTGTGGGC TCAAATATTC GCGTCAACCA AGACTCTGGC
GCATTGCCTA TTAGCACATT CAGTGCCGAA GACTTCGAAG ATTTAGGCAT TACTAGCGGT
GCAGATTTGC TGGCTGAATT GCCCCAGCAG GGCGAAGTCA GCTTCAACAG CGAGCGCGTG
GTGGGCGGTG TAAACGATGC CCGTGGCGAT GTGTCCTCGG TCAATCTGCG CGGTATCGGT
ACAGGGTATA GCTTAACGCT GCTTAACGGA CGGCGCTTAG TATTGCACCC TGGTACCCAG
GCAGAAGACT TAGTGCCCGT GACCACAGTC AACTCAAATG CCCTACCGGT ACGGGGCCTT
AAACGCGTCG AAGTGTTACG CGACGGTGCC GCTGCAATAT ACGGTACAGA TGCCATAGCG
GGTGTTATTA ATTATGTTCT CAAAGACAAA AACACCGGTG GCGACGTGCA GTTCCAATAC
GGTAAAAATG ATGGCACTGA CAAAGACACC TTCAGTTTAT CTGGCTCTGG CGGTTGGTTT
TTTAACAATG AACAAACCCA CCTGACACTC AGCGCCAGCG TGTATGAGCA AGATATGCTC
ATGGCATCTG AGCGAGAATA TGCAGCCAGT TCAGATACCC GTAATTATCC AGGTTTGAAC
CCTGAATTTG TCGGCAACAC CTCATTAGAT GGTCGCACTA CCTCAACGCC TTGGGCAGAG
TTAAGCTCAG GCAGCCTAGG CACATTTCAC ATTCAACCAG ATACATTCGA TGGTTGTGAG
GTTGCCCTTG GCAATGGCAT ATGCGCAGAC GGTGGCAGCT TAGATCGTGA GTTGCGTTAC
GATTCAAACT CAGAACGTTC ATTAAGCTCA GAAGTAAGCC GCGTAAATTT ATACGCATTG
CTGACCCATG ACCTGACTGA TGAAATTGAA TTATATGGCG AAGCTCTGTA TTACCGAGCA
GAAGCTGACC GCCTACGCGA ACAAAGCGGA AACTTAACCG CTCAGCGCTT TACTGTCGCC
AGTGATGCAT TTTACAATCC ATTCGGCGAA GACGTAACAG TTAGACGCTA TCGCCCTATT
GATACGGGCC CACGTGCAAT TAATGTTGAA GATTACTCCT ACCGCTTTTT GACTGGTCTG
CGAGGTTATT ATCAAGATTG GGACTGGGAC ACGGCACTGC TTTATTCAAA AGCGCATACC
CTAGACTCTG CGAATCGGGT GAATACTACT TTGTTTCAGC AAGCAGTGAA CAGCACAGAA
CAAAGCACAG CCTATAACTT GTTCAACGGT GGCAGCTTAA CTTCGCCAAA CAGTGGCGAT
GACACAGGTA ACGACCAAGA CGTTATCGAC GGCTTTATGT TCAATATCGA GCGCGAATCC
CAAACCGAGC TCGCCCTGTA TGACTTTAAA ATATCCCGCC CAGACATTTT CGAGTTACCC
GCCGGGGACG TGGGCATGGC AGTGGGTATT GAATATCGCT ATGAAAGTTT CTCTGATGCC
CGTAGTGATG CGTTAAATGG CACTGATAGT TTTATTGATG TGGTCACCGG CAACCCATCG
GCGCTTGCCA GTACAGTGCT GGGCAGTAGC CCAACGCCAG ACTCTTCAGG TAGTCGCAAT
GTGTTTTCCA CTTACGTGGA ATTTGCAGTG CCTTTATTAG CTGATTTACC TCTGGTAAAA
AGCTTAAACA TGCAATTGGC TGCTCGCTAT GAGCGTTTTT CAGATGTGGG GGATATTACC
AAACCCAAAA TATCCCTCGC TTGGCAAGTC AACGACATAG TTCAGCTTCG TGCAGCTTAT
GCCGAAGGCT TTAAAGCACC AGGATTACCG CAAACCACCG CGGTTGATGT GTCACGCTCA
AACACCCGCT CTGATCCCAT ATCAGGCATT CGCCAAGGCA CCCTTGAAAT TCGTAACGGT
AGCGATGATT TAAAACCTGA AACTAGCACT AACACCTTTG CAGGCATTGT GTTTACCCCT
ATGAAAAACC TGACGTTAAC CGCTGATTGG TGGCACATAA AGCAAAAAGA CGTGGTGGGA
ATTCTAAGCA GTCAAACGCA GATTTTGTAC GATACGCTAC TACGTGCCGA TGGTGGCAGC
AATGCCAACG TTATTCGTGA TGAAAACAAT GAAATCTTGT ATGTGACGAA CGACTACACC
AACCTTTTGC CTCGTGAAAT TAAAGGCGTC GACTACAGCA TCTTTTACAA AATGAGTACT
GAAGTAGGCG ATTTCACCTT CACCGCTAAT GCGGCGAATT TAACCCAATT TGACCAGGGC
TTGGACTCCA TCACTCAGCA GGTAGTCACT GCCCAAGAAA GCGGTAATGA AGCGGTACTA
TTTAATGGTG AAGCTGTTGG TATTCCGGGT GCCGCTGGTG ATTTACTCAC TAAAAATGGT
CGCCCCGAAT GGCGCAGCAA CATCGGCATT AAGTGGCAAA AAGACAGCTG GGGTGCTGGG
GTTAAATACA AATACATCAG CGAGCTAGAA AACGTCTTTT TATCTTATTT TGATGATGCG
GGTGATCTGA TTTATCAACA AATCGACGAT TGGTCTACGG TTGATGCCTA CGCTTCCTAC
TCCTTCAAAG AGCAAAACAG TTTACTAGAG AACACCAAGT TAACCTTAGG TGCACGTAAT
ATTGGTGATA AAGAACCACC TTTCACCTCT GGCACATTTG GCTACGAAAG CAGTGTTCAC
TCTTCATCAG GCCGCTACTT GTACATGACT CTGAACAAGA AGTTTTAG
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| Protein sequence | MKSHQSFKLS SLACSIMLML QTGNSFAAQT QQQNIDIPAQ KLDAALLELA EESETQILFS
SAITPDITTR GISATLSVDD ALRILLENTS LEFVKRSADT FIIREKNKST SSSSNTSETI
EPVEAVKSAA GTPAKKADGE ASVERIKVVG SNIRVNQDSG ALPISTFSAE DFEDLGITSG
ADLLAELPQQ GEVSFNSERV VGGVNDARGD VSSVNLRGIG TGYSLTLLNG RRLVLHPGTQ
AEDLVPVTTV NSNALPVRGL KRVEVLRDGA AAIYGTDAIA GVINYVLKDK NTGGDVQFQY
GKNDGTDKDT FSLSGSGGWF FNNEQTHLTL SASVYEQDML MASEREYAAS SDTRNYPGLN
PEFVGNTSLD GRTTSTPWAE LSSGSLGTFH IQPDTFDGCE VALGNGICAD GGSLDRELRY
DSNSERSLSS EVSRVNLYAL LTHDLTDEIE LYGEALYYRA EADRLREQSG NLTAQRFTVA
SDAFYNPFGE DVTVRRYRPI DTGPRAINVE DYSYRFLTGL RGYYQDWDWD TALLYSKAHT
LDSANRVNTT LFQQAVNSTE QSTAYNLFNG GSLTSPNSGD DTGNDQDVID GFMFNIERES
QTELALYDFK ISRPDIFELP AGDVGMAVGI EYRYESFSDA RSDALNGTDS FIDVVTGNPS
ALASTVLGSS PTPDSSGSRN VFSTYVEFAV PLLADLPLVK SLNMQLAARY ERFSDVGDIT
KPKISLAWQV NDIVQLRAAY AEGFKAPGLP QTTAVDVSRS NTRSDPISGI RQGTLEIRNG
SDDLKPETST NTFAGIVFTP MKNLTLTADW WHIKQKDVVG ILSSQTQILY DTLLRADGGS
NANVIRDENN EILYVTNDYT NLLPREIKGV DYSIFYKMST EVGDFTFTAN AANLTQFDQG
LDSITQQVVT AQESGNEAVL FNGEAVGIPG AAGDLLTKNG RPEWRSNIGI KWQKDSWGAG
VKYKYISELE NVFLSYFDDA GDLIYQQIDD WSTVDAYASY SFKEQNSLLE NTKLTLGARN
IGDKEPPFTS GTFGYESSVH SSSGRYLYMT LNKKF
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