Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_1445 |
Symbol | |
ID | 4173602 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 1737132 |
End bp | 1738439 |
Gene Length | 1308 bp |
Protein Length | 435 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 638054455 |
Product | short chain fatty acid transporter |
Protein accession | YP_661022 |
Protein GI | 109897767 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG2031] Short chain fatty acids transporter |
TIGRFAM ID | [TIGR00366] conserved hypothetical integral membrane protein |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTTAACC ATGTCGCGAA GCCCTTTACA AAACTAGTAG AGCGCTATCT GCCCGATCCC TATATTTTTG TGCTTATCTT GACGCTAGTC ACAATCGGCG CTGCGGTTGT GTTCGAACAG CAACCTGTCT TAAGCGTTAT TACCCAATGG GGTGATGGAT TTTGGGGTTT GCTGAGCTTT TCTATGCAAA TGTTATTGGT ATTAGTCAGC GGTTTTATGT TGGCTAATAC GCCATTAATG AAGAACCTAT TAGGCCGCCT GGCAACGCTG GGAAATACCC CGGGTAAAGC TATTATTTTA GTGACCTTGG TATCACTCAC CGCCAGTTGG ATCAATTGGG GGTTTGGTTT AGTCATAGGA GCATTGTTTG CTAAAGCCCT CGCCCGTCAG ACCCATGTAG ATTATCGCCT ATTAGTGGCC AGTGCTTATT CTGGGTTTGT GGTGTGGCAT GGCGGATTAG CAGGCTCAAT TCCACTGACC ATTGCCACGC CTGGCCACTT CAGTGAGGAC CAAATCGGCG TAATCACCAC AGGCAACACC ATTTTCAGCG GCTTTAACCT TATCCTGCTC GCTATCCTAT TTATCGTCGT CCCTCTGGTT AATCGCCTGA TGTTGCCCCC TGCTGACGAG AGCATTATTG TCAGTCCAGA TAAACTCCAC GACGACCCTA TGCCAAGCGC CGAAAATACT CGGCCAGCGG ATAAACTTGA GAACAGTAAG CTGTTAGCGG TGTTAGTCGG TTTTGTGGGT ATCGTCTACC TAGTGAGTTA CTTTGTTCAA GGCGGCGGCC TTAATCTGAA TATCGTGAAC AGCCTCTTCT TGTTTTTAGC CATCGTCTTA CACGGCACCC CTAAACGTTT GCTGCACAGT CTTCAACAGG CCGTGCACGG TGGGAGTGGC ATTATTATTC AGTTTCCGTT TTACGCGGGA ATTATGGCGG TCATGGTGCA ATCTGGATTA GCACAAAGTT TATCCCAATG GTTGATCAGC TTTGCTAGCG CTGAATCCCT GCCGGTATGG AGCTTCATCA GTGCGGGTAT CGTCAATATT TTTGTGCCTT CAGGCGGCGG GCAATGGGCG GTACAAGCGC CTGTTATTCT GCCTGCTGCC GCAGAATTAG GCGCAGACGT GAGCCGCGTG GCGATGGCAG TGGCGTGGGG CGATGCGTGG ACAAACTTAA TCCAACCATT TTGGGCTTTG CCCGTGCTAG CCATTGCTGG GCTAAAGGCC AAAGATATTA TGGGATTTTG CTTAGTTCAA CTTATCGTCA CCGGTATTAT TATTTCGCTA GTATTGCGCT TTGTGTAA
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Protein sequence | MLNHVAKPFT KLVERYLPDP YIFVLILTLV TIGAAVVFEQ QPVLSVITQW GDGFWGLLSF SMQMLLVLVS GFMLANTPLM KNLLGRLATL GNTPGKAIIL VTLVSLTASW INWGFGLVIG ALFAKALARQ THVDYRLLVA SAYSGFVVWH GGLAGSIPLT IATPGHFSED QIGVITTGNT IFSGFNLILL AILFIVVPLV NRLMLPPADE SIIVSPDKLH DDPMPSAENT RPADKLENSK LLAVLVGFVG IVYLVSYFVQ GGGLNLNIVN SLFLFLAIVL HGTPKRLLHS LQQAVHGGSG IIIQFPFYAG IMAVMVQSGL AQSLSQWLIS FASAESLPVW SFISAGIVNI FVPSGGGQWA VQAPVILPAA AELGADVSRV AMAVAWGDAW TNLIQPFWAL PVLAIAGLKA KDIMGFCLVQ LIVTGIIISL VLRFV
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