Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_1079 |
Symbol | |
ID | 4172618 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 1293262 |
End bp | 1295253 |
Gene Length | 1992 bp |
Protein Length | 663 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638054085 |
Product | diguanylate cyclase/phosphodiesterase |
Protein accession | YP_660659 |
Protein GI | 109897404 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2200] FOG: EAL domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCCACTGT CTAGACAATT GAGCTTAAGC TTGCTCGCTG TGTTGATACT CGTGTTTATA GGCACACTTT GGATCAATAC TAACAACACG CGAGATTTTG TTGATCAGCA ACTAGCGTCA CACGCACAAG ACACGGCGAC ATCGCTTGGT TTATCCATTG CCCCCTACGT GGCAGTGCAG GAAGACTTGC CTGTGGTAGA TACCATGATG AATGCTATTT TTGACCGTGG TTTTTACCAA AGCATGGTGC TGCGTGATGC CAACCAAAAT ATATTGCTCG AAAAACACAA CCCAAGTACG GTTGAAGGTG TCCCTAAGTG GTTTCGGGAA TTATTGCCCC TTACCCCACC AGAAAGCGTT TCCGATGTGA ATGACGGCTG GACGATGGCA GGCACTTTAG CAGTGCAAAG TCACCCTGGG TTTGGGTATC AACAATTGTG GCAAAATGCG GTGCAGTCTT TTTGGATGAT ATTAGCCGTA TTTATCGGTG CTCTAGTCCT GTTATATGTT TTGGTCAAAA TGATCACTAC GCCTTTATTG GCTTTGGTGA AACAGGCTGA CGCCATCAGT AAACAGCAAT TTGAACAAAT TGCGACGATC CCCCGTACCC CTGAATTGAA ACGTATCGTG CTAGCGGTAA ATAGAATGTC TGCTCAGCTA GCTAAGCTGT TTACTCAGCT GTCGAGCCAA GCTGAACGTT ACCGCGATTT TGCCTATCAG GACACGCTTA CAGGTGTTGC TAACCGCCGG GCGTTTGAAC TGGCTTTTGA ACAATTACTC GCTGATAGCG AGCAACATTC ACAGGGTTAT TTACTGCTTA TCCGTTTGAC CAGCTTAAAC GAAGTAAATA GTAGTTTGGG TTACCAGGCG GGTGATGAAT ATGTCACTCT TGTTAGTCAA GAATTGCAAA ATGCGCTTGC TCAACAAGAC CTCAATGGAA CCTTGTTTAG GGTTTCAGGG GCTGATTTTG TGATGCTATT AGAAGATATT GCTCAGCAAC CCACTGTTAG CTTTGCGCAA AGTGTTATTA GCCAACTCAA TGCCATTGAA AAAAGCGAGT ATAGATTAGG CACGGCTCAT GTCGGTGTGG GATCATTTAG TTTTGGCGAC ACTCGCACGG ATGTATTAGA ACGAGCAGAT AATGCCCTTT CTGGTGCGAG TGTTAGCACA GATAGATGGC AGTTAGCACA ACAGGAAGAC GTACATCACA GCAACTGTGA ATGGCGCGCG CAATTAAACA CTATTTTGCA GCAGAATCAC GCAGACTTTG TCGCTCAGCC AATTCAGACT AAGCAAGGCG AGACGCTCTA CGCCGAGTGG TTTGCTCGTT TCAGTTCAGG TACTGCTGCA TCTGCGAATA AGGCTGATAG CTCAGAACAT AATAAGACTG ATAGCGACAA TAAAGCTCAC GGTTACTTAC CCATGGGCCA ACTGGTACCC GCGTCGGTCA GGCTCAATTA CGCGCAAAAA CTAGATGAGT TGTTAATCGC GAGCGCATTG GCGCAGTTGC CTAGTCAGCA GCATGCGATT GGCCTTAATG TATCTCGTTT ATCACTAAGC CAAACTAGTT TTCACCAGTG GCTTATCAGC GCTCTCCCCC AAGATAGTGC AGCCTGCGCA AAATTAGTGC TCGAAATACC AGAACGGGCT TTGGTTAATG GCACACAGGA CTTAATGCGC TTTATTCAGC AGTTGAAGTC GCGCGGCGTT AGGATCACAG TAGAGCGCTT TGGCGCACAA TTAGCTGCAA TCACACACCT TCGCAAAATC CGCCCTGATT ATTTAAAGCT AGATGGGCGT TACGTGCGCA ATATTCACAA TGAGCCTGAC AACCAATTAT TTGTTCAATC TTTGGTCAAC ATCGCACACG GCCTGAACAT CCAAGTCATC GCTGAAATGG TGGAAAGTGA AGCTGAAGCG AAATGTTTGA CTGATTTATT CGTTGACCAT TTGCAGGGCT ATTACATCGG TATGCCGGTC GATACTAAAT AA
|
Protein sequence | MPLSRQLSLS LLAVLILVFI GTLWINTNNT RDFVDQQLAS HAQDTATSLG LSIAPYVAVQ EDLPVVDTMM NAIFDRGFYQ SMVLRDANQN ILLEKHNPST VEGVPKWFRE LLPLTPPESV SDVNDGWTMA GTLAVQSHPG FGYQQLWQNA VQSFWMILAV FIGALVLLYV LVKMITTPLL ALVKQADAIS KQQFEQIATI PRTPELKRIV LAVNRMSAQL AKLFTQLSSQ AERYRDFAYQ DTLTGVANRR AFELAFEQLL ADSEQHSQGY LLLIRLTSLN EVNSSLGYQA GDEYVTLVSQ ELQNALAQQD LNGTLFRVSG ADFVMLLEDI AQQPTVSFAQ SVISQLNAIE KSEYRLGTAH VGVGSFSFGD TRTDVLERAD NALSGASVST DRWQLAQQED VHHSNCEWRA QLNTILQQNH ADFVAQPIQT KQGETLYAEW FARFSSGTAA SANKADSSEH NKTDSDNKAH GYLPMGQLVP ASVRLNYAQK LDELLIASAL AQLPSQQHAI GLNVSRLSLS QTSFHQWLIS ALPQDSAACA KLVLEIPERA LVNGTQDLMR FIQQLKSRGV RITVERFGAQ LAAITHLRKI RPDYLKLDGR YVRNIHNEPD NQLFVQSLVN IAHGLNIQVI AEMVESEAEA KCLTDLFVDH LQGYYIGMPV DTK
|
| |