| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1059 |
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| Symbol | |
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| ID | 4172845 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 1268066 |
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| End bp | 1270399 |
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| Gene Length | 2334 bp |
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| Protein Length | 777 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638054065 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_660639 |
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| Protein GI | 109897384 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000502668 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCAATT TTCACAAAGC AGCATTAGCC GTCTGTATCC AAGGTGCTCT ATTTAGCCAT
ACTCTTCATG CACAGGAAGT ACCTGCAGCA AAAGATAAAG GGTTAGAAAA GATCACGGTT
ACAGCGCAAA AACGTACGCA AAGTATTCAA GAAGTGCCAA TCTCAATTGC TACCTTAAAC
GGAGAGCGAT TTGAAAGCAT ATTTTCAGGT GGTGACGATA TTATCGCCCT AGCAGTGCGC
GTTCCTGGCT TATACGCCGA ATCATCCAAT GGCCGTGTAG CGCCGCGTTT TTATATCCGC
GGTTTAGGTA ACACAGATTT TGACTTAGCA GCCTCTCAGC CAGTTTCCAT CGTGATGGAT
GACGTGGTCA AAGAGAACGT TATTTTGAAA AGCTTCCCAT TGTTTGATGT TGAGCAAGTT
GAGGTTATTC GTGGCCCACA AGGTACCTTG TTTGGGCGCA ACACCACTGC TGGTATAGTC
AAGTTTGACT CAGTTAAACC CACAGAAGAT TTCGATGCTT ACGCCAAGTT AGGTGTGGGT
AATTTAGGAA CAGTCAATTT TGAAGCAGCT GTTGGCGGCG GACTTGCTGA AGATTTATCA
GGACGCTTCT CTGTGTTATC CCAAGACCGG GATGACTGGA TAGACAATGG CTTTACTGGC
GAGAAAGACG CGATTGGCGG CTTTGACGAA AAAGCATGGC GCGGTCAGCT GTTATTTACC
CCAAGCGAAG ACTTTTCAGC GTTGTTAAAC GTGCACGGCC GTGAGTTAGA TGGCACCGCA
TCGGTCTTTC GCGCTAACGT ATTTACTAAA GGCAGTAACG ATTTAAATCA GAATTTCGAT
CGCGACACTG TCTATTACGA TGGCGACATC GACGGTAATG GCACAGACAA TAACCCGCAA
GAATACGAAA ACTATGGCGC ATCTTTAAAG TTAGAGTTTG GCTTAGATGA AATGTCGTTC
ACGTCAATTA CTGCCTATGA AGAAGCAGAA GGCTCAAGCC TTGGTGATAT TGACGGCGGT
GTGTATACCA ATGATTTATC CACGCCGGTA CCTGATGGCC TAACTTCTGC CAATTTCAAC
TCTGGTTTTG AAGACGTGTT AACGTTTCCT GGCGCCATAG GCTTTAGTGC TGTCACCCAA
GATAACTTAG ACGACTTAGA GCAATTTACG CAAGAAATTC GCTTGGCCAG CGAAACTGAC
GATGCCCTTA GCTGGCAAAC CGGTGCGTTT TACTATGACT CGTCTTTCAA CGTGACGAGC
ATCGATGGCT ACTTTGGCGC GACCACAGTA TTCCATGAAA ACACCACTTG GGCTGTTTTT
GGGCAAACAA CTTACGAATT GAACGAGCGT TTGAATGTGA CCGGTGGTGT GCGTTATACC
CACGACAAAA AATCACTTCG TGTTGGAGAG CAAAACGTCG ACGGCTTCGC ATTAATCACT
GGTGATGCCA GTGTACAAGA CTACGACGAC ATTGATGTGG ATGATGGTCA AATCAGCTGG
GAGCTAAGCG CTAACTACAA AGTAAGCGAT GACACCTCGG TGTTTGCTCG TTTTGCTAAT
GGCTTTAGAG CTCAGTCGAT TCAAGGACGT GATGTGGCTT TTGAAGGTGC ACCTTCAGTG
GCTGACGCAG AAACCATTAA CTCAATCGAG TTTGGTTTTA AGTCTGATTT GTTGGAAAAC
ACCTTGCGCT TAAACGCTGC CACTTTCTAT TACCAAATCG ACGATATGCA GTTCTCTGCA
ATCGGTGGTG GTGCAAATAA CGTAGCATTG GTAAACGCTG ATAAAGGTGT GGGTTACGGT
TTTGAAATCG ACGCACAATA CGTAGCGAAC GATTACTTAA CCCTTACCGC AGGTTATAGC
TACAACAAAA CAGAAATTAA AGATGATTCA TTAACGTTAC TGCCTTGTGG CACAAATGAA
GCATTTGGCT CAACAGGTAA CTGTACCGTA CTTGACCCTC GTCCGAATGG CTTTAACGCT
GTTATTGATG GAAACCCTTT CCCGCAAGCG CCAGAGACGA TCTTCACGTT CACAGCACGT
TATGCGGTAC CTTTGGGTAA TGATGGTGAA TTCTTTGCGT TTACAGATTG GGCGTACCAA
GGGGACACGA ACCTATTCTT GTACGAATCT GTTGAGTTTC AAACAGACGG CAACGTAGAA
GGCGGTTTAC GCATCGGTTA TGAAAACTTC GAGCATAACT ATACCGTAGC CTTATTCGGT
CGCAACATTA CCGATGAAGA GAACGTAAAA GGTGCGGTGG ATTTCAATAA CCTAACGGGT
ATTGTGAATC AGCCGCGCAT CTTTGGTATC GAAGCGAAGG TGAGCTTCTA CTAA
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| Protein sequence | MTNFHKAALA VCIQGALFSH TLHAQEVPAA KDKGLEKITV TAQKRTQSIQ EVPISIATLN
GERFESIFSG GDDIIALAVR VPGLYAESSN GRVAPRFYIR GLGNTDFDLA ASQPVSIVMD
DVVKENVILK SFPLFDVEQV EVIRGPQGTL FGRNTTAGIV KFDSVKPTED FDAYAKLGVG
NLGTVNFEAA VGGGLAEDLS GRFSVLSQDR DDWIDNGFTG EKDAIGGFDE KAWRGQLLFT
PSEDFSALLN VHGRELDGTA SVFRANVFTK GSNDLNQNFD RDTVYYDGDI DGNGTDNNPQ
EYENYGASLK LEFGLDEMSF TSITAYEEAE GSSLGDIDGG VYTNDLSTPV PDGLTSANFN
SGFEDVLTFP GAIGFSAVTQ DNLDDLEQFT QEIRLASETD DALSWQTGAF YYDSSFNVTS
IDGYFGATTV FHENTTWAVF GQTTYELNER LNVTGGVRYT HDKKSLRVGE QNVDGFALIT
GDASVQDYDD IDVDDGQISW ELSANYKVSD DTSVFARFAN GFRAQSIQGR DVAFEGAPSV
ADAETINSIE FGFKSDLLEN TLRLNAATFY YQIDDMQFSA IGGGANNVAL VNADKGVGYG
FEIDAQYVAN DYLTLTAGYS YNKTEIKDDS LTLLPCGTNE AFGSTGNCTV LDPRPNGFNA
VIDGNPFPQA PETIFTFTAR YAVPLGNDGE FFAFTDWAYQ GDTNLFLYES VEFQTDGNVE
GGLRIGYENF EHNYTVALFG RNITDEENVK GAVDFNNLTG IVNQPRIFGI EAKVSFY
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