Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_0935 |
Symbol | |
ID | 4172142 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 1115027 |
End bp | 1117912 |
Gene Length | 2886 bp |
Protein Length | 961 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 638053936 |
Product | TonB-dependent receptor, plug |
Protein accession | YP_660515 |
Protein GI | 109897260 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGGAAAATG GTGCTGTTCA ACCTGAATTT GGAAAAACAT TGATTCGAAA GATACTAAAC TTTGTTGCAT TTACATTGCT CGTATACAAA TCAGCTTTCG CTCTAGCGAC GGAAGATTTG ACAGAACAAA AAATAACGAC TGTGTATTTT GACATTCCTG AAAAATCTGC CGGAGATGGG TTAAGAAGTT TTGCTCAAGC GACTAACTTA GCTTTAATTT TTCCTCAAGC ACTTGTGACC TCAGTGACTA CAAATGAACT ACGGGGTCAT TTTTCAGTTG AAGCTGGTCT TCTCGCGTTA CTAGCTGGGA CGGGCCTCAA AGGGACCATT TACGCTAACT CTACAATTTT TGTTGAATCA AGCGCTGATG ATCCGAGAAG TCTCAACAGC TCGCGCAAAG TAGATAACAT GAAAAAAGCA ACATTAACGA AAAAAACAAA GTCTAGTACT TCGAATAAGA ATGCCCAAGC GGGGCTCTCT TCACCTTCAT CCTCTATAGA AAATATAGTG GTGACAGGAG TACGGGGAAA CCCTAGAACA GTTGTCAAAA GCCCTATACC CATTGATGTT TTCACTGCTG AACAACTTGA ACAGCAAGGT CAAGCAGGAC TCTTTGAGGC GTTGCGCTTT CTTGTTCCAT CACTAAATTT ACCGCAACGT TCAGGAGGGG GCACGGGAAC GATTATAGCT TCAGCAGGCT TAAGAGGCTT AAATCCAGAT CAAACACTGG TATTAGTTAA TGGCAAGAGG CGCCACAAGA CCGCATTAAT CAATACCAGC ACTGGCTTAT TTAGTGGTTC AGCTGGAGTC GACTTGAATA TGCTCCCTAC CTCCGCAATA AAGCGTATTG AAGTGCTGCG GGATGGTGCA TCAGCTCAAT ATGGCTCCGA TGCTATCGCT GGGGTAATTA ATGTTATTTT GAAGGATAAA CCTAAAAAGG GTAGAGCTGT CTTTAGCTCC GGAGAGAACT TCGATCGCAG TGATGGAGAA AATATCAGTC TAGGTATAAA CAATGGCTTT ACTCTAGGTG AAAGTGGTTT TATCAACTTA TCCTACGATT ATAAAGAAAG TAAATTATCT AATCGTGCCC ACACGCTGGC TTTGCCAGAA GATGGAGGAC GAAACTTATT TGCCCTTTTA GAAGACGGAA GCTTTGATCC TAGAGAAAGC GGTCTTGATC GTATGGTGAC CAAAAATTTT GGTAACTTCC CGCAAGCGAC AAATATTTTT GGGGTTAATG CTAAAGCGAG CCTTCAAGAC ATGCAGCTTT ATGGTTTCGC GTCTTACGCT CATCGAAAAT CAGATCTAAC ATTTACTTAC CGACTTCCTG GCGACATACG TAATATTATC GATATTTTCC CTTTAGGTTT TCGTCCAGAA GAGCAAATAA AAGAAAATGA CTTCGAACTA GTCGCTGGTA TTACAAGTAC CAAGGCTGAG TTCGATTGGG ATTTTTCAAT GAGCTACGGT TTTGATGATA CTACTTGGAA TAATACCAAC GGTCTGAATG CCAGTTTAGG CTTAAATAGC CCGACATCAT TTTTTCTGGG TAACATGAAT TCAGACGAAA TGATAATTCA ACTGGATACC ACCCGCTCCC TCGTAATAGA AAATAGCGAT CTGCAATTCT CATTTGGTCT GCAATATCGA CGAGAAGGTT TCGAAATACT TAAAGGGGAG TACTTAAGTT ACGCAGACGG GAATAATGGT TTAGAGCCTG GTGCACAAGG TTATCCTGGT TTTTCTCCTG AAGCCGAAAG TAACGTTTCT CGTAATAATA TAAACGGTTA CTTAGATTTA GCATGGGATG TTTCTGAAAC GCTCTTTTTG GCAAGCGCAC TACGTTACGA AAAGTTTAGT GACTCTGCTG GAGATGAAAT TTTATGGAAA GTTAACCTGC GGTATGAGCT CAGTGACAGT GTCGCGTTTC GGTCTTCGGT GAATACTGGT TTTAGAGCAC CAAGTATTCA GCAAATAGGC TTCCGGGGTA GTCGTGGGCA ATTCACCGAT TTAGACAACG ACGGTTTCGC TGAAATTATT GTGCTACGTA AGACTTTACC TGCAACTAAT CCTGCTGCAA AGGCTTTAGG AGCAACCCCC TTAGCACCTG AGACATCGGT TAATGTTAGC GCAGGCATTA GCTACACCCC GCGAGAGACT ATATCGTTTA CCATGGATTT TTATCAAATT GATGTAGATG ACCGTATCGC TCAATCTTCT CAATTTAATC GCGGTGATAA ACGTTTGGCT TTATCTGGCG GTACTATAGG TAATGAAATT TCAGCGCTTC TTGATGAAGC AGGTTTTGAC GCATCATTAG GCGCTCTAAA CTATTTTACA AATGCCATTG ATACACGAAG TCGTGGTGTC GATATCGTTG CTACTTGGTC GCCTAAAATG GTGATGGGTC ATCTAATCCT CAGCGGTGCA TACAATTACA ACAAAGTTGA TGTTGTTAAT TCGCTCGACA ATCCTCAGGA GTTATCAGGT TTGGTATTAG CTGATGGCTC GCAAATAGCA CAGTTCGATC GTGAACGTTT AGGTACCTAT ACCGATGCAG TACCTGATTC TAAACTTAGT ATTTCTGCCA ACTACGGATT AGATAAATGG CTAATAAATG TTCGCGCCAC TCGCTTCGGC CAATGGACAG TCAAAGGTAT TACTGAGAAC CTCGATACAA AAAACCAAGC AAAATGGATA GTTAACCTAG AAGCCGGTTA TCAATTAGAA AACGGACTCG CGTTCTTTGC TGGTGCTAAC AACATCCTCA ATGTTTATCC AAAGGAACGC TCAGCTAATT CTTTAGGGAC TAACTTCTAT GATACCTATT CACCATATGG TTTCACTGGA GGAAGCTGGT ACATACGTAC TTCTTATGTG TGGTAA
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Protein sequence | MENGAVQPEF GKTLIRKILN FVAFTLLVYK SAFALATEDL TEQKITTVYF DIPEKSAGDG LRSFAQATNL ALIFPQALVT SVTTNELRGH FSVEAGLLAL LAGTGLKGTI YANSTIFVES SADDPRSLNS SRKVDNMKKA TLTKKTKSST SNKNAQAGLS SPSSSIENIV VTGVRGNPRT VVKSPIPIDV FTAEQLEQQG QAGLFEALRF LVPSLNLPQR SGGGTGTIIA SAGLRGLNPD QTLVLVNGKR RHKTALINTS TGLFSGSAGV DLNMLPTSAI KRIEVLRDGA SAQYGSDAIA GVINVILKDK PKKGRAVFSS GENFDRSDGE NISLGINNGF TLGESGFINL SYDYKESKLS NRAHTLALPE DGGRNLFALL EDGSFDPRES GLDRMVTKNF GNFPQATNIF GVNAKASLQD MQLYGFASYA HRKSDLTFTY RLPGDIRNII DIFPLGFRPE EQIKENDFEL VAGITSTKAE FDWDFSMSYG FDDTTWNNTN GLNASLGLNS PTSFFLGNMN SDEMIIQLDT TRSLVIENSD LQFSFGLQYR REGFEILKGE YLSYADGNNG LEPGAQGYPG FSPEAESNVS RNNINGYLDL AWDVSETLFL ASALRYEKFS DSAGDEILWK VNLRYELSDS VAFRSSVNTG FRAPSIQQIG FRGSRGQFTD LDNDGFAEII VLRKTLPATN PAAKALGATP LAPETSVNVS AGISYTPRET ISFTMDFYQI DVDDRIAQSS QFNRGDKRLA LSGGTIGNEI SALLDEAGFD ASLGALNYFT NAIDTRSRGV DIVATWSPKM VMGHLILSGA YNYNKVDVVN SLDNPQELSG LVLADGSQIA QFDRERLGTY TDAVPDSKLS ISANYGLDKW LINVRATRFG QWTVKGITEN LDTKNQAKWI VNLEAGYQLE NGLAFFAGAN NILNVYPKER SANSLGTNFY DTYSPYGFTG GSWYIRTSYV W
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