Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_0419 |
Symbol | |
ID | 4173808 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 494407 |
End bp | 497160 |
Gene Length | 2754 bp |
Protein Length | 917 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638053422 |
Product | TPR repeat-containing protein |
Protein accession | YP_660003 |
Protein GI | 109896748 |
COG category | [R] General function prediction only |
COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
TIGRFAM ID | [TIGR02917] putative PEP-CTERM system TPR-repeat lipoprotein |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATGAATA AAATGAGAAA AACGATAATC GCACTATCAC TAGGGATGTT GATCAGTTGT GGGCAGCAAA CTAGTGAAGA ACATATCCAA GCCGCGCAAG AATTTATCGC GCAAAATGAC AGTGCTTCGG CGATTATCTC GTTGAAAACC GCCGTACAAT TAGCCCCTAA ATCGCCAGAA GCGCGCTTTG AATTGGGTAA AGTTTACCTT GACGAAAAGC AATTTGAGAG TGCTGAAAAA GAACTCAGTC GCGCATTAGA ATATGGTTAC GATGGGGCTA AGGTGCTGCC GTTGCTGACC CGCGCCTACC AACGAACCGG CGCCTATGCG GCTATCAGTG AAATGGAAGA TAACAACGTC GACCTGAGTA ATGAGGACAA AGCGGAAATT GGTTATTTCA AAATCGTATC TTTAGTGCGA TTAAATAAGC CCGATGATGC GCGCGCGATC ATCGCTGATC AGTCGCAGTT ACAGACAGAT TCCGTATTCA AGTCACTGAG CCAAGCTTAT AAAGACATAC TTGATAAAGA TTATCCTCTG GCGCTGCAAA GCCTTAGCAA TATCAAAGAT AGCCACCCTG ATCATCCTGA AGTCCTTAAA CTTTTGGCGC AACTGCATTT AAGCTTGGGC GACCCGAAAG CGGCGGCTCA AGCGTTTGAC CGATATGTGT CTTTGTATCC CGATGATTTA CAGACCACCT TTGTGCTTGC CAAACTGTGG GTAGATTTAG GGGAAACGGC AAAAGCGGAA CCCTACCTCG ATCAGTTATT GGCCGTGAAT GCTAAGAATG GTTTGCTCAA TCAACTTAAA GCGGCTGCAC GAATAGCGGA TAAAGACTAT GGAGAGGCCC AGAAATACGC TGAGCTAGGT ATTCAAAATG GTATGAATGA TCCTTCGCTA CGTTTAATAG CAGGTTATGC CGCATACCAG CAAAAAGATT TTGAGGCCGC TCAGCAGCAC CTTTCATTAG TGGCTAGCAG TTTGCCTAGC AACCATCCTG GTTTGCGTTT ACTGGCTGCT AGCCAATTAC AGCTGGGCTT GAATGCTGAG GCGGGGGATG TGCTGGAGCG CATGGAGCAA ATCAACGAGC AAGATGCGCA ACTGTTTTCA AAAGCCAGTT ATGAATTATT GCGTCAGGGA AATGTAAAAG ACGCCCAAGA GCTAGTAGAG AAATCTTCCA GTATCAGTAC CACGGCAGAA GACCTCACAC GTTTAGGTTT GCTTAAACTC TCGCTGAATA ATCTTGATGG TATCGTTAAT CTAGAAGAGG CACTGGAAAA GTCACCTGAA CTTGAGAGTG CTAAAAAAAC ACTCGCTACT GCCTACATCA CCACTAAGCA ATATGACAAA GCCCTAGAAT TGGCGCAGCA ATGGAAAGCT GAAGATGCCA ATGACATCAG CGCGTATTTG CTGGCTGGCG AAGTGTTCAG TAAACAGCAA GATCTAAGCA ATGCGAAAGC CGAGTTTGAG CAGGTGATGC GCATTGACCC TGAACACAAA GGCGCAGCGC TGGGCTTGGT CAACATCGCT ATTACCGAAA AAGATGTGGT TCGAGCGCAA TCAGGCTTAA CGGCTTTGCT TAATCGTTTT CCTGATTATA CGCCAGCATT GGCGACGGCT TATCTGTTTA ATAAACAGCA AGGTAAAACA CAGCAAGGTA TTGAGGTTAT TGAGAGCGCG CTGAACAAGG CGCCTGACAA TCAAGAGCTG AGTATGTTGT ATGCCCGTGT ATTGCTGCTT GAAAAGCAAT ATGACCAGGC ACTGCAACAG TTCGTTAAAT TTGATCAAAA TGAATCTTTG CCACCTGCTT ATTGGCAGGG GAAAGGCCAA GCGCTGATTC GTTCAGGTGA TTTGCAGGGC GCACAGGATC ATTATGACAA GTGGTTGAGC ATTGCCCCGA ACGACAAACA AGCCGTCGTG GGCAAGTTAC TCCTGCTGGA CAACACGGGC AAATTTGCCG AAGGCGTCAA GTTAAGCGAA GGTTTCTTAG CGGTGCGCAA CGACACTCAA ATGCAATTGC TTAACACGCA TTTCTTATTG ATGAATAAAG ATATGGACGC AGGAAGGAAG GCCTACGAGG CAATACCGCA AGAGCTAAAA AGTATGCCCA TTGTAAAGGG CTTTCGAGCA CGTTTACTGA TTGTTGATGG TGATTTTGAG CAAGCCGAGC CAAATGCTCA TGCTGCCTAT GAAGGTTTAC CAAATGGCAG AAATCTAGTC TTGTGGGTGT TTACCCTTGA GCGATTAAAT AAAAAAGAGC AAGCACTGAG TGCGATTAAA GCCCATTTAA ACGTATCACC GAACGACGGT GCTGCTTTAA TGATGTTGGC CGAAAGGCAA ATTAATAGTG GTGATGACGA AGCTGTTGCT AGCTATCAAA CCTTATTACA GAAAAACCCT AACAACTTTG TTGCACTGAA TAATTTAGCC TATTTGTATC TACAGCAAAA TCAGCTAGAC AAAGCCCTGG AATACGCTGA AAGCGCGGTA AAACAGCGCC CTGATAATGC TGCCGCAGTA GATACCTATG CCCAAGTGTT GGTGGCTAAG GAAGAATACC GAAAAGCAGT GAAACAATAC GATGCGGTTG TGAATGACAA AATGCGCAAT GAAGAGATTT ATCTCAATTA CGTGGAAGCA CTTTTCCTCG AGGGCAGCAC GTTGCTAGGC AAACGCAAGC TGGAACAACG TGAAATGAAA ACTGAGGAAA ATATTGCTCG CCAAGCTCAA TTGAAAGCCA AATACGCCGA TTAA
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Protein sequence | MMNKMRKTII ALSLGMLISC GQQTSEEHIQ AAQEFIAQND SASAIISLKT AVQLAPKSPE ARFELGKVYL DEKQFESAEK ELSRALEYGY DGAKVLPLLT RAYQRTGAYA AISEMEDNNV DLSNEDKAEI GYFKIVSLVR LNKPDDARAI IADQSQLQTD SVFKSLSQAY KDILDKDYPL ALQSLSNIKD SHPDHPEVLK LLAQLHLSLG DPKAAAQAFD RYVSLYPDDL QTTFVLAKLW VDLGETAKAE PYLDQLLAVN AKNGLLNQLK AAARIADKDY GEAQKYAELG IQNGMNDPSL RLIAGYAAYQ QKDFEAAQQH LSLVASSLPS NHPGLRLLAA SQLQLGLNAE AGDVLERMEQ INEQDAQLFS KASYELLRQG NVKDAQELVE KSSSISTTAE DLTRLGLLKL SLNNLDGIVN LEEALEKSPE LESAKKTLAT AYITTKQYDK ALELAQQWKA EDANDISAYL LAGEVFSKQQ DLSNAKAEFE QVMRIDPEHK GAALGLVNIA ITEKDVVRAQ SGLTALLNRF PDYTPALATA YLFNKQQGKT QQGIEVIESA LNKAPDNQEL SMLYARVLLL EKQYDQALQQ FVKFDQNESL PPAYWQGKGQ ALIRSGDLQG AQDHYDKWLS IAPNDKQAVV GKLLLLDNTG KFAEGVKLSE GFLAVRNDTQ MQLLNTHFLL MNKDMDAGRK AYEAIPQELK SMPIVKGFRA RLLIVDGDFE QAEPNAHAAY EGLPNGRNLV LWVFTLERLN KKEQALSAIK AHLNVSPNDG AALMMLAERQ INSGDDEAVA SYQTLLQKNP NNFVALNNLA YLYLQQNQLD KALEYAESAV KQRPDNAAAV DTYAQVLVAK EEYRKAVKQY DAVVNDKMRN EEIYLNYVEA LFLEGSTLLG KRKLEQREMK TEENIARQAQ LKAKYAD
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