| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0091 |
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| Symbol | |
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| ID | 4172863 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 104987 |
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| End bp | 106351 |
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| Gene Length | 1365 bp |
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| Protein Length | 454 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638053090 |
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| Product | MATE efflux family protein |
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| Protein accession | YP_659677 |
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| Protein GI | 109896422 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGCCTACAT CTCGCGACTT AACTGTCCCA CCTGTTCATC AGGTATTAGT GAAACTCACC
TTACCCATGA TTTTTGGCAT TATCGCGGTG CTGTCAGTGT CGTTAATCGA TACCTATTTT
GTTAGCCAAT TAGGTACCGA ACACCTTGCC GCTTTGTCAT TCAGCTTTCC CATCACTATG
AGCATATCAA GTTTAGCCAT CGGCTTGGGG GTTGGAGCGG CATCAGCGGT CTCCCGCGCC
GTGGGCTCAA ATGACAAAGA ACAGGCCAAG CGTTTGTCTA CCGATAGTTT ATTACTCGGT
ATATTGGTGG TTATGTTTGT GGCTATTCTT GGTTATACAT ACGTGAAACC GTTACTGAGT
TTATTAGGTG CAACAGGGCA AGTGTTGGAG TTAGGTGCGC GCTATATGCG TATCTGGTTT
ATCTCTGTGC CGTTCTTAGT TGTGCCCATG ATTGCAAACG CTTTGATCCG TTCGGTAGGG
GATGCATTCT GGCCAAGCTT AATGATGATT GGCTCTGCGC TGGTCAATAT TGTGGCCACA
CCTATCTTAA TTTTTGGTTG GGGCGTTATT CCGGCCTTTA ATATTGAAGG AGCAGCTTAC
GGCACTTTAC TGGCCCAAGT ACTGACTCTG TTCGCATCAC TAGCCATACT GGTTATGCGT
GAAAAATTAC TGAGTTTTCA GCTTGCCTCC AAAGAGCAAC TAGTGGCTTC GTGGCGCTAC
TTGCTTTCTA TTGCTGTGCC TGCCGCCGCG GGTAATATGG TCAATCCTTT ATCGATCGCC
ATTGTCACCG CTATTGTGGC GTGGTTTGGC GAGAAATCAG TTGCTGCATT CGGCGTGGCA
ACACGAATCG AGTTTTTTGC GGTGATACCC ATGCTTGCTT TGTCTTCTGC CATTGGCCCA
TTGGCGGGAC AAAATTGGGG CGCGGGCAAA GTTCAACGCA TTATTGATGG ACTCAAGATT
AGCTATTGGG TGTGTATTGT ATGGGCGTTG ATGTTGAGTG CGTTTTTATG GTTTACCGGG
CCGTTTATTG TCGGTGCTTT TACGGACGAC GGCAAAGTAT CAGCCCAGGC GTTGAGTTAT
CTGCGCATCA TTCCCTTGAG TGTCTGGGGT TACGGTATCG TAATTGTAGC TGCTGCTGCC
TTCAACTCTA TTGGCAAGGC TAAAGTGGGG CTGGGGTTTT ACGTGGTTCG CTCTGCGTTA
TTTTATGTCC CTTTATCTTG GCTTGGCGCC ACATTTGCGC AAATCGATTA TGCCTTTTTT
GGTATCGCCG TCGCTAATGT TGTATCAGGC ATTGCAATAG GTTGGTATTC ACTTTGGAGG
CTAAACCGTA TTCAAGCTAA AGAAACGGCT GACGCACCAG GTTAA
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| Protein sequence | MPTSRDLTVP PVHQVLVKLT LPMIFGIIAV LSVSLIDTYF VSQLGTEHLA ALSFSFPITM
SISSLAIGLG VGAASAVSRA VGSNDKEQAK RLSTDSLLLG ILVVMFVAIL GYTYVKPLLS
LLGATGQVLE LGARYMRIWF ISVPFLVVPM IANALIRSVG DAFWPSLMMI GSALVNIVAT
PILIFGWGVI PAFNIEGAAY GTLLAQVLTL FASLAILVMR EKLLSFQLAS KEQLVASWRY
LLSIAVPAAA GNMVNPLSIA IVTAIVAWFG EKSVAAFGVA TRIEFFAVIP MLALSSAIGP
LAGQNWGAGK VQRIIDGLKI SYWVCIVWAL MLSAFLWFTG PFIVGAFTDD GKVSAQALSY
LRIIPLSVWG YGIVIVAAAA FNSIGKAKVG LGFYVVRSAL FYVPLSWLGA TFAQIDYAFF
GIAVANVVSG IAIGWYSLWR LNRIQAKETA DAPG
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