| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_1790 |
|---|
| Symbol | |
|---|
| ID | 4117332 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rubrobacter xylanophilus DSM 9941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008148 |
|---|
| Strand | - |
|---|
| Start bp | 1812127 |
|---|
| End bp | 1816410 |
|---|
| Gene Length | 4284 bp |
|---|
| Protein Length | 1427 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 638036587 |
|---|
| Product | superfamily I DNA/RNA helicase |
|---|
| Protein accession | YP_644561 |
|---|
| Protein GI | 108804624 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1112] Superfamily I DNA and RNA helicases and helicase subunits |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.824667 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCCTGC TGGCTAAAAA GGCGATCTCC CAGTACTTCC GGACCGGGTG CAGGCGCCAG
CTGCGCCTCA ACCTCTCCCC GGACACGCAG CGGTTCCGGC CCGAGAGGGA GGCGCAGGGC
ATGCCGCCCC GCCAGAGGCC CCGGCCCGGG CTCGAGCAGA TCGCCCGGCT GGGCGAGGAG
TGGCAGGCGG CCAAGCTGCG CGACCTCGCC GAGACGTTCG GAGAAGGGGC GGTGGTCGGG
GAGGCTTGCA CGAATTCCGC GGGGCAGAGA CGCTACCGCA GCCTGCCGCT GGAAGGGGCC
CTCTCCGGCG CCCGCCCCGG GCGTTTCCTC GTCGAGGCGG AGTACGCCGT GGGGCCGGCC
TTCGAGAGCG CCCTCGGCAT CACCTCTCTG CGGGGGCGGT ACGGCCTGGA GTACGCCGGG
GTGCGCCCGG ACATCATCCA GGTCCTCCCG CCGGGCTGCT TCTCCCGCTC CGTGGACCCC
TCCGGCGAGA CGCGCGCCCT CGGGGCCGGA GATACGCGCC CGCAGCTGCG CGTCATAGAC
GTCAAGCTCA CCGCCGAGCC CTCCCCCGGC TACTTCGCCG AGGTGGCCTA CTACACGATG
GCGCTCGCCG GGTGGCTCGC GGACAGGGGC CTTGATCACC GCTTCGTCGC CGTGCCCGAG
GGGGCGGTCT GGCCCGGCTC CCACAACGCC TCGAGGCTCG TCGTCGCCCA CAGGGAGATG
GGGGGTGGGG GGCCGGACGG GGCGCGGCTG CGCGAGGCGC TGGAGCAGGA CCTGGAGCCG
GTCCCCTTCG AGGTCTTCGC CCAGCGCCTC AGGCGCTTTT TCCGGGAGGA GCTGCCGCAG
GTGCTCTCGA CGCCCTGGCG CGAGCTTCCG TGGCACGTGG ACAACCGCTG CAAGGGCTGC
GACTACCTCG GCTACCCGTG GGTGAGCGGC GGAGAGAGGA CGGATCACCC CGACCACTGC
ATGCCCGAGG CCGAGAGGGA GGGGCATCTG AGCCGGGTCG CCTTCGTCTC CCGGGGGGCC
GGCGCCGCGC TGCGGGAGCG GGGCGTGAAG GACGTGGAGG CCCTCGCCGC GCGCTCGCCG
GAGGACCCCG TCTTCGGCGC GCACCACGTG CTCAAGGCGA CCCGCACGGT GGTCTCGGGC
CGGGCGGAGG CCCTCAAGAC CGGGGTGGCG GCGATCCCGA AGGACAGCGG CACCTCGGCG
GTCATGCCGA GGTGGACGGA CCTCCGCGTC TTCCTCTCCG CGGACTTCGA CGTGGGCAGC
GCCATCACCC TCTCCTTCGG CCTCAAGGCC TTCTGGATCG AGCCCCGCCC GTTCGGTTCG
CACGACACCG CCCCCCGCAG GCACAGGAGG TGGGGGGCCG AGTCGTTCGT CGTGGACCTC
AGGGACCTCG AGGCCGAGCG GCGGGAGCTC ATGGCGTTTC TGGAGAGGAT CGCGACCATC
CTCGAGGAGG CCTGCGAACT GGATGGCCGT TCCACGGTGC AGTTCTACCT CTGGGACTCG
CTGCAGCTCG AGCACCTCTC CCGGGTCGTG GGGCGCCACC TGGGGGCCAT CCTCGACCGG
GAGGGGCTCT GGCATCTGGC CTGGCTCTTC CCGCCGGAGG AGCTGCTGCA GAACCCCGCG
CTCTCGACCC GCCAGTCGCC CATCACGACC GTGCGGGACG TCGTCCGCTC CGTCCTCGCC
GTCCCGGTGC CGCACTACTA CAGCCTCCTC GAGACGGCCC GCCGCTACCA CCCGCAGAGC
CTCCCCGAGA ACCTGAGGAG GTTCGACGTC CACCCCCTCT TCGAGGACGC CTTGAGCGAC
CAGATACCCT CCGAGCGGGC GCACGAGATC TGGTCGCGCT CCACGAGCCC GCGCCACTGG
TCCACCCAGA TCGGGACCCT GCGGCGCACG GTCGCGCAGC GGCTCACCGC CCTCGAGGCC
GTCGTCCGCC GCCTGGAGGG CGACCTGCGC CCGCGCCTGC CCAACCAGGC CGCCCCGCGC
ATACAGGCCA TACGGCCGCC CCAGACCCCG CCCCGCCTCA GCTTCGACGG CCAGCTCTGG
TACGCCTTCG CCAGGCTCGA CGCGGGCCTG CAGCAGCTCG AGGTGCAAGA GCTGCGCGCC
CTGCCTCCCC ACGCCCGGGA GGCGAAGTTC GAGTGCGCCC GGCTGCCCGA GCGCCTCCTC
GGGAGCGACG AGGTACGGGC CCTCGCCGCG CTCGGGCTGA GGCCCCGCCC CGGGCGCAGG
GTCTACCGGC TCTCGCCGGA CAGCCGGGAG GTGAAGTTCA AGGAGGGGGA CTTCGAGCTC
GCCCTCGCCC CCGAGGGCTG GCCGGACTTC CTCGACCGCA GCCTCAAGAG CGTGACGGAG
GGGACCCCGC TCGAGGAGGC CTGCGCCTCG GAGTACCAGC GGCGCATGGG CGAGGTCACG
AAGGTCGCGG TCGCGGGCAT AGACCGGGAC CGCGGCCTGA TCGCGCTCGA CCCCAGACCT
CTGCCCGGTT GCCCGCGCCT CGAAGACCTG GAGGAGGCGG GGATAGCCGG CTTCGACTCG
GACGTGGTCC TCGACAGGGT CTACACCGAC TACTTCACCC GGAAGCTTCG CGACGCCCTG
CAGGCCATCG GCAACCCGCC CGCCGCCCGC GACGACCCCC TCGTGCGGCG TGCCCTCGGC
CGGATCCGGG CCCGCGGCGC CCGCGCCACC GCCCACACCC CGCCGGCGGA CTTTCTCTGG
GGCGCCAGAA CTATGCACGA GACCCGCGTC GGACGGGAAC TCGGGCCGGT GCGCCGCGCT
CTCGAGGGGG CCGGCCTCGG CCTCAACCCC ACGCAGTGGC GGGCTTGGGA GGAGGCCCTC
ACCCGCCGCC TCTCCCTCAT CTGGGGGCCG CCGGGGACCG GCAAGAGCCG CACGGCGCGC
GCCGTGATCC TGGGCGCCGT CCTGGAGGCT CACCAGCAGA AAAAGCCCAT CAGGGTCCTC
GTCTGCGCGC AGAACTACAA CGCCATGGAC GTCGTTCTGC TCGGCGTCTA CGAGCAGCTC
AAGGCCCTGC TCCCCGAAGA CGACTTCCGG CTGTACAGGG TGCGGAGCCA CACCCGACCC
CGGGATACGG GCGTCCCCGA GGAGATAGAC ACCGGGCTAG ACCGCTCCCG GCCCACGGAG
CGCCTCGTGG GGCTCTCGGA GAGGCTCGAG GCCCGCCGGG GTATCACCGT GGTCGGCGCC
ACGCCCAACC AGGTCCACAA CCTGCTCAAG GTCTCCTGCG GGGAGGCCCG CGGCGAGCTC
TTCGACCTCA TCCTCATCGA CGAGGCCTCG CAGATGGACG TCGCCCTCTC GATACTCGCC
CTCTGCTCCC TGGCGAAGGG GGGCAGCGTC GTCCTCGCCG GCGACCCGAA GCAGCTTCCC
CCCATCCGGC AGGCCGACCC GCCCCTGGGG CTCGAGGCCA TGGTCGGCTC GGTCTACGCC
TTCTGCGCGG ACTGCCACGG CGTCGAGCCC GTCATGCTCG ACGTAAACTA CCGGTCCAAC
GCCACGCTCG TGGGCTTCTC GCTCGAGGCG GGCTACGAGC CCACGCTCAG GAGCCATTCC
CCGGATCTCA GGCTGAACCT CCTCGAGCCC CTGCCGAAGG AGCGGCCCGA AGGCTGGCCC
GCCTCGCTCT GCTGGACGCC CGAGTGGGCG GCGCTGCTGG ACTCCGATCA CCCCGCCGCC
TGCTTCGTCT ACCCCGAGGG CCGGAGCAGC CAGTGGAACC GGTTCGAGGC CGACACCGTT
GCCGCCCTCA TCACGCTGCT TTACGGGCGG GCGGCGGGGC TCTCGGGCGA GCGCGACCCC
GCGACCGGGA GGCCGCTGCC CGTCCGGGGC AGGCCTTACT CTCCAGAGGA GTTCTGGAAG
AGGGCGGTCG GGGTCGTCAC CCCCCACCGG GCGCAGCAGG GTCTCATCGT GAGCCGGCTG
CGGAAGGTCT TCCCGGAGGT CGAGCCGGAG CTCATCCGGG GCGCCGTGGA CACCGTCGAG
CGCTTCCAGG GCCAGGAGCG CGACGTCATC CTCGCCTCCT ACGCCCTCGG CGACCCCGAC
GCCATAGCCG ACGAGGACGA GTTCCTCATG AGCGAAAACC GCTTCAACGT CATGGCCTCC
CGCCCGCGGG CGAAGCTCGT CGTGTTCGTC TCGCGGGAGG TCGTCGACCA TCTCCCGGAA
GACCTCGACG TCCTGCGCGG CTCGCGGCTG CTCAAGGTCT TCGTGGACTC CTTCTGTCGC
GAGGAGCGCC CCGCCGTTCT GGGCTTCCTC GAGGGCGGGG CGAGGAGGAC GGTGCCGGGG
ACGCTGAGGC GCCGCGGGGG GTGA
|
|---|
| Protein sequence | MPLLAKKAIS QYFRTGCRRQ LRLNLSPDTQ RFRPEREAQG MPPRQRPRPG LEQIARLGEE
WQAAKLRDLA ETFGEGAVVG EACTNSAGQR RYRSLPLEGA LSGARPGRFL VEAEYAVGPA
FESALGITSL RGRYGLEYAG VRPDIIQVLP PGCFSRSVDP SGETRALGAG DTRPQLRVID
VKLTAEPSPG YFAEVAYYTM ALAGWLADRG LDHRFVAVPE GAVWPGSHNA SRLVVAHREM
GGGGPDGARL REALEQDLEP VPFEVFAQRL RRFFREELPQ VLSTPWRELP WHVDNRCKGC
DYLGYPWVSG GERTDHPDHC MPEAEREGHL SRVAFVSRGA GAALRERGVK DVEALAARSP
EDPVFGAHHV LKATRTVVSG RAEALKTGVA AIPKDSGTSA VMPRWTDLRV FLSADFDVGS
AITLSFGLKA FWIEPRPFGS HDTAPRRHRR WGAESFVVDL RDLEAERREL MAFLERIATI
LEEACELDGR STVQFYLWDS LQLEHLSRVV GRHLGAILDR EGLWHLAWLF PPEELLQNPA
LSTRQSPITT VRDVVRSVLA VPVPHYYSLL ETARRYHPQS LPENLRRFDV HPLFEDALSD
QIPSERAHEI WSRSTSPRHW STQIGTLRRT VAQRLTALEA VVRRLEGDLR PRLPNQAAPR
IQAIRPPQTP PRLSFDGQLW YAFARLDAGL QQLEVQELRA LPPHAREAKF ECARLPERLL
GSDEVRALAA LGLRPRPGRR VYRLSPDSRE VKFKEGDFEL ALAPEGWPDF LDRSLKSVTE
GTPLEEACAS EYQRRMGEVT KVAVAGIDRD RGLIALDPRP LPGCPRLEDL EEAGIAGFDS
DVVLDRVYTD YFTRKLRDAL QAIGNPPAAR DDPLVRRALG RIRARGARAT AHTPPADFLW
GARTMHETRV GRELGPVRRA LEGAGLGLNP TQWRAWEEAL TRRLSLIWGP PGTGKSRTAR
AVILGAVLEA HQQKKPIRVL VCAQNYNAMD VVLLGVYEQL KALLPEDDFR LYRVRSHTRP
RDTGVPEEID TGLDRSRPTE RLVGLSERLE ARRGITVVGA TPNQVHNLLK VSCGEARGEL
FDLILIDEAS QMDVALSILA LCSLAKGGSV VLAGDPKQLP PIRQADPPLG LEAMVGSVYA
FCADCHGVEP VMLDVNYRSN ATLVGFSLEA GYEPTLRSHS PDLRLNLLEP LPKERPEGWP
ASLCWTPEWA ALLDSDHPAA CFVYPEGRSS QWNRFEADTV AALITLLYGR AAGLSGERDP
ATGRPLPVRG RPYSPEEFWK RAVGVVTPHR AQQGLIVSRL RKVFPEVEPE LIRGAVDTVE
RFQGQERDVI LASYALGDPD AIADEDEFLM SENRFNVMAS RPRAKLVVFV SREVVDHLPE
DLDVLRGSRL LKVFVDSFCR EERPAVLGFL EGGARRTVPG TLRRRGG
|
|---|
| |