| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_0944 |
|---|
| Symbol | |
|---|
| ID | 4116786 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rubrobacter xylanophilus DSM 9941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008148 |
|---|
| Strand | + |
|---|
| Start bp | 981834 |
|---|
| End bp | 983417 |
|---|
| Gene Length | 1584 bp |
|---|
| Protein Length | 527 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 638035729 |
|---|
| Product | thiamine pyrophosphate enzyme-like TPP-binding protein |
|---|
| Protein accession | YP_643723 |
|---|
| Protein GI | 108803786 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.000374916 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCACGG TCCGCGAGGT GACCATCGAC CTTCTGCGCG AGCTCGGGAT GACCACCATC
TTCGGCAACC CGGGCTCGAC CGAACTTCCG TTTCTCAGGG ACCTGCCGGA TGACTTCCGC
TACGTGCTGG CCCTGCAGGA GGCGAGCGCG CTCTCCATGG CCGAGGGCTA CGCCCGGGGG
ACGGGCAACG CCGCGCTGGT GAACCTGCAC ACCGCCCCGG GGCTCGGGAA CGCCATGGGC
GCCCTGGTCA CCGCCTACCA CAACAAGACC CCCCTCGTGG TGACCGCCGG GCAGCAGCAC
CGGGGCCACC TGGCGCTCGA GCCCCTGCTC TCCGGTCGGC TCGTGGAGCT GGCCCGGCCG
TACGTGAAGC GGAGCCACGA GCCGGGAAGC GCCGGGGACG TCCCGCACGA GCTGCTGCGC
GCCTACCACA CCGCGCGGCA GCAGCCCTCC GGGCCCGTCT TCCTCTCCAT CCCCATGGAC
GACTGGGAGG CGGAGGCCGT GCCGCCCGAG GTGCGGGAGG TCTCCTACCG CACGGCCCCC
GACCCGGAGG CCCTGCGGCG CGCCGCGGGC GTGCTGCGGG CGGCGCGGCG GCCCGCCATC
GTCGCCGGCC CCGGGGTGGC CCGCTCGGGG GCCTTCCCCG GCGTGGCGGC GCTCGCCGAG
CGGCTGCGGG CCGAGGTGTG GCAGGACGGC GTGGCGGCGC TCGCCGGGTT CCCGCAGAGC
CACCCCCTCT TCAGGGGCGT CCTCCCCCTC GCCCAGCGCC TGGTGGCCGA GACCCTCGCC
CCCTACGACG CCGTGCTGGT GCTCGGGGCC CCGGCCTTCA CCTACTACCC CTACCTGCCG
GGGCCGGTCG TGCGGGAGGG GACGGCGCTC GTCCAGATCA CCGAGGACCC CGAGGAGGCC
GCCCGCGCCC CGGCCGGGAC GGGGATCGTC GGGGACGTGG GGCTCGCCGC CGGGGGCCTG
CTGGAGCTCT TGCCGGAGCC GGAGCGCCCG GCCCCCCCAG CCCCAAAGCC GCCCCCCGCC
CCCGAGCCCT CCTCGCCGAT GAGCGTGGAC TACGTGATGC ACACTCTCGC CGGCCTCCTC
CCCGAAGGGG CCGTCATCGC CGACGAGTCC ACCTCTAGCA AGCCCGTGCT CTACCGCCGC
CTCCGGGCCG ACGACCCGCT CGGGCACCTC ACCTCGGCGG CGGGGGGCCT GGGGTTCGCC
ATGCCCGCCG CCGTGGGGCT CGGCCTCGCC CTGCCCGGCC GCAAGGTGGT CTGCGTTATC
GGGGACGGCT CCAGCATGTA CTCCATCCAG TCCCTGTGGA CCGCCGCCCG CTACGGGGTC
GGGGTGGCCG TGGTGGTCAT CAACAACCGG GGCTACTCCA TCCTCAAGAG CTTCCGGGAC
CTCATGGGGC TCGGGCCGAA CATCCCGGGG CTGGAGCTGC CCGGCATAGA CATGGTCCAG
ATAGCCCGCG GCTTCGGCTG CCGCGGCGAG CGGGTGGAGG AGCCCGAAGA CCTCCCCGCA
GCTCTCAAGC GCGCCCTCTC CTCCGGGGAG CCCTACGTGG TAGACGCCCT CGTGGACACC
GCCGTCCCCC GCATGGCGGG CTGA
|
|---|
| Protein sequence | MPTVREVTID LLRELGMTTI FGNPGSTELP FLRDLPDDFR YVLALQEASA LSMAEGYARG
TGNAALVNLH TAPGLGNAMG ALVTAYHNKT PLVVTAGQQH RGHLALEPLL SGRLVELARP
YVKRSHEPGS AGDVPHELLR AYHTARQQPS GPVFLSIPMD DWEAEAVPPE VREVSYRTAP
DPEALRRAAG VLRAARRPAI VAGPGVARSG AFPGVAALAE RLRAEVWQDG VAALAGFPQS
HPLFRGVLPL AQRLVAETLA PYDAVLVLGA PAFTYYPYLP GPVVREGTAL VQITEDPEEA
ARAPAGTGIV GDVGLAAGGL LELLPEPERP APPAPKPPPA PEPSSPMSVD YVMHTLAGLL
PEGAVIADES TSSKPVLYRR LRADDPLGHL TSAAGGLGFA MPAAVGLGLA LPGRKVVCVI
GDGSSMYSIQ SLWTAARYGV GVAVVVINNR GYSILKSFRD LMGLGPNIPG LELPGIDMVQ
IARGFGCRGE RVEEPEDLPA ALKRALSSGE PYVVDALVDT AVPRMAG
|
|---|
| |