| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_2019 |
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| Symbol | |
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| ID | 4079956 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | - |
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| Start bp | 2129149 |
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| End bp | 2130282 |
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| Gene Length | 1134 bp |
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| Protein Length | 377 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 638010395 |
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| Product | succinyl-diaminopimelate desuccinylase |
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| Protein accession | YP_617063 |
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| Protein GI | 103487502 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
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| TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00489333 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACCCGCA ATATCGACCC CATCGAGCTA GCCAAGGCGC TGATCGCCGT CCCCTCCGTC
ACCCCGGCAA CAGGGGCGGT GTTCGACGTA CTCGAGGCGG CGCTCACGCC GCTCGGGTTC
ACGGTCGAGC GGTTTATCGA CGGGATCGAA CCCGACGGGC CGGTTGAAAA CCTGCTCGCG
GTACGACGCG GCAGCGGGCC AAAGCATTTT GGCTTTGCGG GGCATCTCGA CGTCGTGCCG
CCGGGGGTTG GCTGGACAAG CGATGCCTTC GCGCCCGAAA TACGCGGCGA ACTGCTTTAC
GGGCGCGGCG CGGTCGACAT GAAAGGGGCA ATCGCCGCCT TTGTCGCCGC GGCCGCCGCC
ACCCCGGTCG ATGCCGGGAC GATCAGCCTG ATCATCACCG GCGACGAGGA AGGCCCGGCA
ATCTTTGGCA CCCGCGCGCT GATGGAGCAT ATGGACGCGC GCCGCGTGAC GCCCGACATG
ATCGTCGTCG GCGAGCCGAC CTCGGTGAAC CGGCTGGGTG ACATGGTGAA GATCGGGCGG
CGCGGATCGG TCAATATCTG GATCGACGTG CCGGGGACGC AGGGGCATGT CGCTTACCCC
CACCTGGCCG ACAATCCGAT CCCCAAGCTG GTGAAGATAT TGGCGGCGAT CGACGCGGTG
GTGCTGGACG AAGGCAGCGA CTGGTTCCAG CCGTCGAATA TCGAGTTCAC CGACATCGAG
GTCGGCAACG GCGCGACCAA TGTCATTCCG GCGTCGGCGC GCGCGCGGCT GTCGATCCGC
TTCAACGACC AGCACCGGGG CGCCGAGCTG GTGGCGATGA TCGAGCGCAT CGCGCACGAG
GTCGAACCCG CGGCCAGGGT GCTGGGCAAG ATTTCGGGCG AGGCCTTTCT GACGCCGCCG
GGCGAATTGT CCGAACTGGT CGCCGAGGCG ATCCATGCCG AGACCGACAT CTGCGCCGAA
ATGTCGACGA CGGGCGGCAC CTCCGACGCG CGCTTCCTGC ACGCGCTGTG TCCGGTCGTG
GAGTTCGGGC TGACCAACGC AACGATGCAC AAGCTCGACG AAGCGGTGGC GATCGAGGAC
CTGCACAGGC TGACCGCAAT CTATCGCGGG ATCTTAATGC GCGTTTTCCT CTAA
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| Protein sequence | MTRNIDPIEL AKALIAVPSV TPATGAVFDV LEAALTPLGF TVERFIDGIE PDGPVENLLA
VRRGSGPKHF GFAGHLDVVP PGVGWTSDAF APEIRGELLY GRGAVDMKGA IAAFVAAAAA
TPVDAGTISL IITGDEEGPA IFGTRALMEH MDARRVTPDM IVVGEPTSVN RLGDMVKIGR
RGSVNIWIDV PGTQGHVAYP HLADNPIPKL VKILAAIDAV VLDEGSDWFQ PSNIEFTDIE
VGNGATNVIP ASARARLSIR FNDQHRGAEL VAMIERIAHE VEPAARVLGK ISGEAFLTPP
GELSELVAEA IHAETDICAE MSTTGGTSDA RFLHALCPVV EFGLTNATMH KLDEAVAIED
LHRLTAIYRG ILMRVFL
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