Gene Sala_1257 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSala_1257 
Symbol 
ID4080272 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingopyxis alaskensis RB2256 
KingdomBacteria 
Replicon accessionNC_008048 
Strand+ 
Start bp1309822 
End bp1310445 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content71% 
IMG OID638009617 
Productthymidylate kinase 
Protein accessionYP_616304 
Protein GI103486743 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG0125] Thymidylate kinase 
TIGRFAM ID[TIGR00041] thymidylate kinase 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.199425 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGATCCGCG GACGCTTCAT CACGCTTGAG GGCGGCGAGG GTGTCGGCAA ATCGACGCAG 
TTGCGCGCCT TGTCGGAGGC ACTCGCCGCG CGATCGATCG AGGTTGTGGC AACGCGTGAA 
CCCGGCGGCA GCGTGGGCGC CGAGGCAATC CGGACGCTGC TGATGGAAGG CAGCGACGAC 
CGCTGGGATG CGCGCAGCGA GGCGCTGCTG TTCGCCGCCG CGCGCGCCGA CCATGTTGCG 
CGCACGATCC GCCCGGCGCT TGCGCGTGGC GCATGGGTAT TGTGCGACCG ATTCGTCGAT 
TCGAGCCGCG CCTATCAGGG CGGCGGGGGG GGGATCACCG ACGCCGATAT CCTGGCGCTC 
CACCGTTTCG GATCCAGGGG GCTGCTGCCC GACCGCACCT TCCTGTTGAC CGTGCGCCCC 
GATGAAGCGG CGCGCCGACT GGCAGCGCGC GGTGATCGCG ACCGCATGGG CAGCAAGCCC 
GCGGACTATC AGGCGCGCCT CGCCGCGCGA TTCGCCGAAA TGGCCGCGAC CGAGCCGCAG 
CGCTGGCGGT TGATCGACGC CGACCTGCCC GCCGCCGACG TCACCGCGGC CATGCTTGCG 
GAGCTGATCG AATGGCTGCC ATGA
 
Protein sequence
MIRGRFITLE GGEGVGKSTQ LRALSEALAA RSIEVVATRE PGGSVGAEAI RTLLMEGSDD 
RWDARSEALL FAAARADHVA RTIRPALARG AWVLCDRFVD SSRAYQGGGG GITDADILAL 
HRFGSRGLLP DRTFLLTVRP DEAARRLAAR GDRDRMGSKP ADYQARLAAR FAEMAATEPQ 
RWRLIDADLP AADVTAAMLA ELIEWLP