| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1063 |
|---|
| Symbol | trpA |
|---|
| ID | 4082328 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | - |
|---|
| Start bp | 1096103 |
|---|
| End bp | 1096897 |
|---|
| Gene Length | 795 bp |
|---|
| Protein Length | 264 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 638009424 |
|---|
| Product | tryptophan synthase subunit alpha |
|---|
| Protein accession | YP_616113 |
|---|
| Protein GI | 103486552 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0159] Tryptophan synthase alpha chain |
|---|
| TIGRFAM ID | [TIGR00262] tryptophan synthase, alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.50074 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACCC GCTTCGCCGC CGCCTTCGCC AAACCCCATC CCGCGCTCGT CGCCTTCATA
ACCGGCGGCG ACGGCGACAC CGCCGCGAAC CTCGACGCGC TCGTCGCGGG GGGTGCCGAT
GTGATCGAGC TCGGCATGCC CTTCACCGAT CCGATGGCCG ATGGCCCCGC GATCCAGGCC
GCCAACCTGC GCAGCCTCGC CAGGGGCACG ACCACCGCGG ACATCTTCGC CATCGCCGCC
GCCTTCCGCC AGCGCCACCC CGACACCCCG CTCGTCCTGA TGGGCTATGC CAATCCGATG
ACGATCCGCG GGGGCGACTG GTTCGCGGCC GAATGCGCCA GGGTCGGCGT CGATGGCGTC
ATCTGCGTCG ATGTTCCCGC CGAGGAAGAC CCCGAACTCG GCCCCGCGCT CCGCGCCATG
GGCATCGACC TCATCCGCCT TGCCACGCCC ACGACCGACA CCGCGCGCCT GCCCACCGTC
CTCGATGGCG CGGGCGGCTT CCTCTATTAT GTCTCGGTCG CCGGCATCAC CGGCCAGCAA
CAGGCCGCAC AGGCGAGCAT TGACGAGGCC GTCGCGCGGC TCAAGGCCGC GACCGACCTG
CCCGTCGCCG TCGGCTTCGG CGTCCGCACG CCCGATCAGG CGGCGCAGAT CGCGCGCGTC
GCCGACGGCG TCGTCGTCGG ATCGGCCTTC ATCGACATCA TTGCCGCGCA TGGCGACGCC
GCGGCCCCGC ATGTCGAGGC TTTCACCCGC ACCCTCGCCG ATGCTATTCA TAGCGCCAAG
GAGATCGCCG CATGA
|
|---|
| Protein sequence | MSTRFAAAFA KPHPALVAFI TGGDGDTAAN LDALVAGGAD VIELGMPFTD PMADGPAIQA
ANLRSLARGT TTADIFAIAA AFRQRHPDTP LVLMGYANPM TIRGGDWFAA ECARVGVDGV
ICVDVPAEED PELGPALRAM GIDLIRLATP TTDTARLPTV LDGAGGFLYY VSVAGITGQQ
QAAQASIDEA VARLKAATDL PVAVGFGVRT PDQAAQIARV ADGVVVGSAF IDIIAAHGDA
AAPHVEAFTR TLADAIHSAK EIAA
|
|---|
| |