| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2846 |
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| Symbol | |
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| ID | 4076665 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 3015663 |
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| End bp | 3019028 |
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| Gene Length | 3366 bp |
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| Protein Length | 1121 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 638008175 |
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| Product | UvrD/REP helicase |
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| Protein accession | YP_614840 |
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| Protein GI | 99082686 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
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| TIGRFAM ID | [TIGR02784] double-strand break repair helicase AddA, alphaproteobacterial type |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.347056 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCGCA ACGCCGCCTC AGAGGCACAG TTTCGCGCCG CCCGCCCAGA TGCCTCTACT
TGGCTTGCCG CCAATGCCGG CTCGGGCAAG ACCAAGGTGC TCACGGATCG CGTCGCGCGG
CTGTTGCTGC GCGGCGTTGA GCCGCAGCAT ATTCTCTGCC TGACCTATAC CAAGGCGGCG
GCGAGCGAGA TGCAGAACCG CTTGTTTCAA CGTCTTGGGG AATGGGCGAT GCTGCCCGAT
GCCAAACTGC GCGCAGCATT GGTGGATCTC GGTGCTGAGG ACGCAGCCAT AGGCGATGGG
CTGGCGCAGG CCAGAACCCT GTTTGCGCGC GCGATCGAGA CTCCCGGTGG TCTCAAGATC
CAGACCATTC ACTCTTTTTG TTCATCACTC CTGCGCCGTT TCCCGCTTGA GGCCGGTGTC
AGCCCACAGT TTACCGAAAT GGAAGACCGC GCGGCCGCCA TGCTGCGCGC CGAGATCGCA
GAGGATATGG CGCAAGGCCC GGACGCACAT GTTGTAGAAG CGGCCTCCTT CCATATCGGT
GGCCTGGATT TTGAGACCCT GACGGCCGAG ATCTGCCGCC GCCAAGCCGG GTTCGACCCG
GCGCTGGACC ACAACAGACT GGGTGAGGTT TTTGATCTTC CAGCCGGGTA TGACCGTAGC
GCGCTGCAAG CCGAGGTTTT CCTAGGCAAT GAGGAAGAGA TCCTGTCGCG TACCATCGAG
ATGCTGAAAT CGGGCGGAGC GACGGACACC AAGAACGCTG ACAAACTTGC CCGGATCACT
GCGGTCACCC CGGATGTGCT CCCCCTTCTG GAAGATGTGT TCCTTACCGG CAAAAGCGCC
AAAGATCCCT TCAGCGCCAA GATAGGCAGC TTTCCCACCA AGAAACTGCG CGAAAGCAAC
GGTGTCCTGA TGGATCAGCT TGAGCCTTTC ATGGCGCGGG TCGAAGCTGC CCGCCCCAAG
CGGCTCGCAC TGGATGCGAT GGAAAAATCC ATCGTTCTGC ATGATTTTGC CCGGGTTTTT
CTGCCCGAAT ACGAGCGACG CAAACAGCTG CGTGGTTGGT TGGACTTTGA TGACCTGATC
GTCAAAGCCC GAAATCTTTT GAATGATCCC GCGGTTGCAG CCTGGGTGCT CTATCGTCTG
GATGGCGGCA TCGACCACAT CCTTGTGGAC GAAGCGCAGG ACACAAGCCC AGTGCAGTGG
GATGTGGTTG AAAAGCTCGC ACAGGAGTTC ACCGCAGGTG AAGGCGCGCG CGCCGATGTG
GAGCGCACGA TCTTTGTGGT CGGTGACAAG AAACAGTCGA TTTATTCCTT TCAGGGCGCC
GACCCGGACG CCTTTGACCG CATGCAGGCG GAGTTTGGGA ACAGGCTCAA GGACACCGGC
GAAGGTTTGC AAAACGCCAG CCTCGCATTT TCCTTTCGAT CCTCGGCGGC AATTCTTGGC
CTTGTGGATG TCGTCTTTGA CGGAGAACAC CGTGCGGGGT TTGCCGACGA TGCCAAGCAT
CAGGCATTCA AGTCCGATTT GCCGGGGCGT GTCGATCTGT GGCCTTTGGT GGAAAAAACC
GATGACGAAG AAGAGCGCGA TTGGACCGAT CCCGTTGATC GTCCCAGCCC TCGCCACCAT
TCCGTAATCC TTGCAGAGCG GATTGCCAAT CACATCAAAG AGATGATTGC GCAAGGTGTG
ACGATCCCCG AAGACGGCCC CGAGCGTGGT ACGTTTCAGC GCCGCCCCGT GCATGCAGGC
GATTTCCTGA TCCTTGTGCA GCGACGTTCG GATCTCTTTT CCGAGATCAT TCGCGCCTGC
AAGGCCGCGG GCCTGCCGAT TGCGGGCGCG GACCGCCTGA AGGTGGGCGC GGAACTGGCG
GTCAAAGACA TTGCAGCGCT ATTGCGGTTT CTCGCATTGC CCGAGGACTC CCTGTCGCTT
GCCGAGGCCC TGAAATCCCC GATCTTCGGC TGGAGCGAGC AGCAGCTCTT TGACCTCGCA
CATCGGCGGA GTGAAATGCA CCTCTGGCCT GCGCTGCGAG CACGTTCCGA GGAATTTCCC
CAGACCATGG AAATCCTCAA TGATCTACGC CGCCAGGCAG ACTTTCTTAG GCCCTATGAT
CTTATTGAGC GCATCCTGAC CCGTCATCTG GGGCGCGCCA AGATCCTTGG CCGCCTTGGA
ACGGAGGCCG AAGACGGGAT CAACGCGCTG TTGTCGCAGG CCTTGGCCTA TGAACGGACC
GAAGTGCCAA GCCTCACCGG GTTCCTTGTC TGGATGCAGA CCGATGATCT TGAGATCAAA
CGACAAATGG GGGCCGCAAG TTCGATGATC CGTGTAATGT CGGTGCATGG ATCCAAAGGG
TTGGAAGCAC CGATTGTGAT CCTGCCTGAT ACCACCAAAC GCCGTCCGTC CCCCGCAGCC
GAGGTGATGG AGGTCGACGG CACCCCTCTC TGGCGTATGA GCAGCGATCA GATGCCCCCC
GCCATGGATG CCGCACGCGT CTTTGCACAG GAAAAGCAGG CCAACGAGCG TCTCCGCCTC
TTGTATGTGG CGCTGACGCG CGCGGAAAAA TGGCTCATCG TGGCTGGGGC TGGTGATCTC
GATAAGGGGG GTGACAGCTG GTACCAGCGG GTTGAGGCCG CCATGAAAAC CATGGGAGCC
CTGCCCTATG ACGCGCCCGG CGGAGAAGGC TTACGCTGGG CTCATGGCGA CTGGGAAGCC
CCCGTCTTTG TGCCATCGGA TTTGACCGAA GAAGACGAAA TCACGTTGCC AGAGGTCTTT
CGTCGCGCCG CCCCTGCCTA TGTCGCGCCA GCGGCCACCC TGCGTCCCTC GGAGGATCTG
GGCGGTGCAA AGGCTCTGCC TGGCGACAGC GGCCTGAGCG AAGAGGACGC CAAAGCGCGG
GGCACTGCAT TGCACCTCTT GCTGGAGCAT CTGCCCAAGC TTCCAGAAGA GGACTGGGAC
AACCGCGCCG AAGCCATTGC GCAGCATGAG GATTGGAAGG CCCTCTTGGC AGAGGCCCGC
CAGGTGCTTT GCTCAGATGA CTGCGCAGAT ATCTTTGCCC CCGGTACGCT CGCAGAGGTG
CCGGTCTCTG CCGATCTGGG CACAGTTCGG CTGCACGGTA TCATTGACAG GCTGGTAATT
ACCCCGGATC GCGTGCTTGC GGTCGATTTC AAGTCAAACG CCGTGGTCCC GCAAAGCGCC
GAAGCCTGTC CAGAAGGTCT GCTGCGTCAG ATGGGTGCCT ATGATGTCGC CCTGCGCCAG
ATCTATCCAG ATCGCCAGAT CGAGACTGCA ATCCTCTGGA CGCGCACGGC GACGCTCATG
TCACTACCGG TCACCTTGAT TACACAGGCC CGTGAACGGG CGGGTTTCCA GCGACTGGAA
CCTTGA
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| Protein sequence | MSRNAASEAQ FRAARPDAST WLAANAGSGK TKVLTDRVAR LLLRGVEPQH ILCLTYTKAA
ASEMQNRLFQ RLGEWAMLPD AKLRAALVDL GAEDAAIGDG LAQARTLFAR AIETPGGLKI
QTIHSFCSSL LRRFPLEAGV SPQFTEMEDR AAAMLRAEIA EDMAQGPDAH VVEAASFHIG
GLDFETLTAE ICRRQAGFDP ALDHNRLGEV FDLPAGYDRS ALQAEVFLGN EEEILSRTIE
MLKSGGATDT KNADKLARIT AVTPDVLPLL EDVFLTGKSA KDPFSAKIGS FPTKKLRESN
GVLMDQLEPF MARVEAARPK RLALDAMEKS IVLHDFARVF LPEYERRKQL RGWLDFDDLI
VKARNLLNDP AVAAWVLYRL DGGIDHILVD EAQDTSPVQW DVVEKLAQEF TAGEGARADV
ERTIFVVGDK KQSIYSFQGA DPDAFDRMQA EFGNRLKDTG EGLQNASLAF SFRSSAAILG
LVDVVFDGEH RAGFADDAKH QAFKSDLPGR VDLWPLVEKT DDEEERDWTD PVDRPSPRHH
SVILAERIAN HIKEMIAQGV TIPEDGPERG TFQRRPVHAG DFLILVQRRS DLFSEIIRAC
KAAGLPIAGA DRLKVGAELA VKDIAALLRF LALPEDSLSL AEALKSPIFG WSEQQLFDLA
HRRSEMHLWP ALRARSEEFP QTMEILNDLR RQADFLRPYD LIERILTRHL GRAKILGRLG
TEAEDGINAL LSQALAYERT EVPSLTGFLV WMQTDDLEIK RQMGAASSMI RVMSVHGSKG
LEAPIVILPD TTKRRPSPAA EVMEVDGTPL WRMSSDQMPP AMDAARVFAQ EKQANERLRL
LYVALTRAEK WLIVAGAGDL DKGGDSWYQR VEAAMKTMGA LPYDAPGGEG LRWAHGDWEA
PVFVPSDLTE EDEITLPEVF RRAAPAYVAP AATLRPSEDL GGAKALPGDS GLSEEDAKAR
GTALHLLLEH LPKLPEEDWD NRAEAIAQHE DWKALLAEAR QVLCSDDCAD IFAPGTLAEV
PVSADLGTVR LHGIIDRLVI TPDRVLAVDF KSNAVVPQSA EACPEGLLRQ MGAYDVALRQ
IYPDRQIETA ILWTRTATLM SLPVTLITQA RERAGFQRLE P
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