| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2817 |
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| Symbol | thiP |
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| ID | 4076636 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 2980047 |
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| End bp | 2981618 |
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| Gene Length | 1572 bp |
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| Protein Length | 523 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 638008143 |
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| Product | thiamine transporter membrane protein |
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| Protein accession | YP_614811 |
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| Protein GI | 99082657 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1178] ABC-type Fe3+ transport system, permease component |
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| TIGRFAM ID | [TIGR01253] thiamine ABC transporter, permease protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.229213 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.678489 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGCGCA GCGCTCAGCC GATAAGCTTG CCCGTCGTCG CGACCTGGCC CGGAACCTGC
GCTGCTCTTG GTGTGTTGCT CTTGGTTCTG GGCACACTTG TCGCGGTCGC CTGGCATGCT
GACGGGGGCG CTAGGTTTGC CGCAGCCGAT TGGGCCGCGC TTCGCTTCAC GCTCGTCCAA
GCAAGCCTGT CTGCGCTGCT GAGTGTCGGG CTTGCCGTGC CTGTGGCGCG TGCCTTGGCG
CGGCGGCGCT TTTGGGGGCG GCGTGCACTC ATTACCTTGC TCGGCGCGCC ATTCATCCTG
CCCGTGATTG TTGCCATTCT CGGATTGCTC TCTGTCTTTG GGCGGTCTGG TTGGGTGAGT
GACATCCTCA GCCTCATCGG CGTGCCGCCC TTGCAGATCT ACGGGCTGCA CGGGGTAGTG
ATTGCCCATG TGTTCTTTAA CTTGCCACTG GCGACCCGTC TGATCCTTCA GGGCTGGCAA
GAAATCCCGG CCGAACGCTT TCGTTTGGCG GCACAGTTGA ACGCGGGGCC GCGCGCAATA
TGGTTCTTGA TCGAATTGCC GATGCTGCGA CAGGTCCTGC CGGGTGCTGC GGCGGTGATT
TTCGCCATCT GCCTTTCCAG CTTTGCGGTT GCCTTGACCC TGGGGGGCGG GCCTCGCGCC
ACCACGCTGG AACTCGCGAT CTACCAGGCC TTTCATTTTG ACTTTGATCT TGGGCGGGCG
GCGATGCTTG CGACTGTGCA GCTTGGTCTG ACCATTGTGG CAGCACTTCT AGCGCTTCGG
GCCTCCACCA CCGAGGGGCT GGGGGCTGGA CTTGATCGTG CGGTGATGCG TTGGGACGGC
AAAGGCGCAT TCACGCGCTG TCTGGATGGT GTCTGGATTT TCGCTGCTGC TCTGTTCCTG
CTGTTGCCAT TGCTGTCGGT GGTGATGGCA GGGCTCCCGG GGCTTTGGAC GCTGCCGCGT
TCGGTCTGGA GCGCGGCATT GGTCTCTTTG CAGGTTGCAA CCCTGAGTAC GGTGCTGTTG
TTGATTGTTG CGCTGCCGCT CTCGGCGAGC ATCGCGCTTG GACGCAAGCG CTTGGGCGAG
GTCGCGGGGA TCCTTGGGCT CGCCGCGTCG CCATTGGTGA TTGGGACTGG ATTGTTTGTC
ATGGTCTATC CCTTTGTGGA TCCGCGCCTC TTGGCTCTAC CGGTGACGGC CCTCGTGAAC
ATGGTAATGG CCTTGCCCTT TGCGCTGCGC ATCCTCGTGC CACGCCTGCG GCAGGTGCTT
TGGCAGAATG GCCGGCTTGC CTTGGCGCTG GATATGCGCG CGGGTACGGT CTGGAGGATT
GTTCTGCTGC CGCGCTGCCG CGCGCAGATC GGATTCGCGA CCGGGCTTAC TGCTGCGCTT
TCGCTTGGCG ATCTTGGTGT AATCGCACTT TTTGCTGATC CAGAAGTCGC CACCCTGCCG
CTCCAGGTCT ACCGGCTGAT GGGGGCCTAC CGGATGGAGG CGGCGCAGGC AGCGGCGCTC
CTGTTGTTTG TGTTGTCGAT AGGTGCATTC TGGGCGCTGG ACCGGGGAGG GCGTTTTCAT
GCTGAGGCTT GA
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| Protein sequence | MARSAQPISL PVVATWPGTC AALGVLLLVL GTLVAVAWHA DGGARFAAAD WAALRFTLVQ
ASLSALLSVG LAVPVARALA RRRFWGRRAL ITLLGAPFIL PVIVAILGLL SVFGRSGWVS
DILSLIGVPP LQIYGLHGVV IAHVFFNLPL ATRLILQGWQ EIPAERFRLA AQLNAGPRAI
WFLIELPMLR QVLPGAAAVI FAICLSSFAV ALTLGGGPRA TTLELAIYQA FHFDFDLGRA
AMLATVQLGL TIVAALLALR ASTTEGLGAG LDRAVMRWDG KGAFTRCLDG VWIFAAALFL
LLPLLSVVMA GLPGLWTLPR SVWSAALVSL QVATLSTVLL LIVALPLSAS IALGRKRLGE
VAGILGLAAS PLVIGTGLFV MVYPFVDPRL LALPVTALVN MVMALPFALR ILVPRLRQVL
WQNGRLALAL DMRAGTVWRI VLLPRCRAQI GFATGLTAAL SLGDLGVIAL FADPEVATLP
LQVYRLMGAY RMEAAQAAAL LLFVLSIGAF WALDRGGRFH AEA
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