| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1736 |
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| Symbol | |
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| ID | 4075800 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 1830497 |
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| End bp | 1831915 |
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| Gene Length | 1419 bp |
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| Protein Length | 472 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 638007050 |
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| Product | MATE efflux family protein |
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| Protein accession | YP_613731 |
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| Protein GI | 99081577 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.282832 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGCGCA TAGATCCCAC CCCCCAGATG AGCTACGGCG GCCATATCCG CGCCGTGTCC
ATTCTTGGTC TGCCGTTGAT CGGCGGGCAT CTGGCGCAGT TTGCCATTGG TCTCACCGAT
ACGGTGATGC TGGGCTGGTA CGGGGTGAAC GAGCTGGCTG CAGTGACACT GGCCGGGTCG
TTCTTCTTTG TGTGGTTCAT CCTCGGCGCT GGGTTTGCCT TTGCGGTGAT GCCGATGGTG
GCCTCGGCCA CTGCGACCGA CGACCATCGC CGGATCCGGC GGGCAACCCG GATGGGGCTG
TGGCTTTCGA TTGTCTATGG CGTGCTGTCC ATGCCCTTGA TGTGGTATTC CGAGACGATC
CTGCTGGCGG CCGGGCAAGA GGCGCAGGTG GCGGCTGATG CAGGCACCTA TCTGCGGATT
GCAGGCTGGG GGATCTTTCC GGCGCTTCTG GTCATGGTGT TCAAATCCTA TCTGGCGGGC
TTGGAGCGCA CGCAGGTGGT CCTTTGGATC ACTGTGCTCG CGGCGGTGAT CAATGCCATC
GTGAACTATG TGCTGATTTT TGGGCATCTG GGCCTGCCGG AGATGGGCCT TCAGGGCGCG
GCCCTTGCGT CGCTGGCGAC ACAGACCGTG TCGGTCGTCG CCGTGGTCGC CTATGCGCTC
TGGCGTTTGC CGGAGCATGA CCTGCTGCGC AACCTGCAAC GCCCTGACTG GGAGATGATG
CGCGAGATCG TGCGCCATGG CCTGCCCATC GGCCTGACCA CCTTGTGCGA AGTGAGCTTG
TTTTCAGCCT CTGCCCTGAT GATGGGCTGG CTTGGTACCG TGCCGCTGGC GGCACATGGG
ATCGCCGTCT CTGTTGCAGG GCTGACATTC ATGGCGCATC TTGGGCTCTC CAATGCGGCC
ACCATCCGGG TTGGAAACGC GCTCGGACGG GGGGATAAGA CCCATATGGT GCGGGGGGCA
ATTGTTGTGA CCCTGGCCTC GCTCGGGATC GCGGTGGCGA CTGCGATGGT GTTTTTCCTC
GCGCCTGAAC CCCTTATCCT GCTCTTTCTC GATCCAGAAG ATCCGCAAAA GACCGAGATC
CTTGCGATTG GTGTATCGCT GCTGGCGATG GCGGGGCTGT TTCAGCTGAT GGACGGGATG
CAGGCGATTG CACTTGGTCT GTTGCGGGGG CTTCTTGATA CGGGGGTGCC GATGGTGATG
GCCGCACTCA GCTATTGGGC GGTGGGGGTT CCGACCTCGT ACATCCTTGG CTTTCGGGCC
GAGATGGGCG GCGTAGGTGT CTGGATCGGT TTGATCCTCG GTCTTAGCAC CGCCGGCGTT
TTGTTGCTGT TGCGCTTCTG GTTCCACGCG TTGCGTCGGG TGCCCACAGC GCCCACAGGA
GAGATGCGCG CGGATGAGAT CATGGCCGAT CCCGTCTAG
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| Protein sequence | MARIDPTPQM SYGGHIRAVS ILGLPLIGGH LAQFAIGLTD TVMLGWYGVN ELAAVTLAGS
FFFVWFILGA GFAFAVMPMV ASATATDDHR RIRRATRMGL WLSIVYGVLS MPLMWYSETI
LLAAGQEAQV AADAGTYLRI AGWGIFPALL VMVFKSYLAG LERTQVVLWI TVLAAVINAI
VNYVLIFGHL GLPEMGLQGA ALASLATQTV SVVAVVAYAL WRLPEHDLLR NLQRPDWEMM
REIVRHGLPI GLTTLCEVSL FSASALMMGW LGTVPLAAHG IAVSVAGLTF MAHLGLSNAA
TIRVGNALGR GDKTHMVRGA IVVTLASLGI AVATAMVFFL APEPLILLFL DPEDPQKTEI
LAIGVSLLAM AGLFQLMDGM QAIALGLLRG LLDTGVPMVM AALSYWAVGV PTSYILGFRA
EMGGVGVWIG LILGLSTAGV LLLLRFWFHA LRRVPTAPTG EMRADEIMAD PV
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