| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0979 |
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| Symbol | |
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| ID | 4078141 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 1045222 |
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| End bp | 1047177 |
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| Gene Length | 1956 bp |
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| Protein Length | 651 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 638006282 |
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| Product | peptidoglycan-binding LysM |
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| Protein accession | YP_612974 |
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| Protein GI | 99080820 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGAAGA CAAGCGGGAT AGGCGCGGGG GCCAGTTTGG CCATTGGCAC CGTCGCCACG
GTGGTGGTCG TTGGAGGCGG GGTCTTTCTC GCACGGGGTG GGATCTTGGG CGAAGGGGCC
AGATCCATGG TCGAGCAGCA GCTGGTGGCC CTGGGCCTTG CAGCGCCGCC GGCGCCCGAA
GTGGTGCCCG TGAAGCCTGT GGTGACACAG CCGCAGACGG CCGATCCCGA GACGCGCGTG
GTCGAGCCTG AGCCGACGCC CGAAGCCACG GCTGGCGAGA CGGTAGAAAC GCAACAGGAC
GCACCAACCG CAGAGCCCGC TTTTGTACTG CAGGCGCCCA AGCTGGAGAT CGCCCGGTTT
GAGCCAGACG GCTCCGGTAT CGTAGCGGCG TCCGCTCAGG CGGGGGTCGA GGTGCAGGTG
CTTCTTGACG ATGAGGTTCT CGATACGCAA ACCGTGCCCG CTGCGGGGGA GTTCGTGTCC
TTTGTGACCA TCGACCTCAG TGACAAGCCG CGGCTGCTGA CGCTGCTGGC GCGCCACAAC
GGGCAGGAGC TGGCCTCGGA AGACAGCTTT ATCCTTGCGC CGATGCCCGC GCCCGCCGCG
CCGGAACCGC AGGTCGATCA GCTTGCCGCG GCGCAGACCG ATTCTGATAT CGCTGCCCCC
GAGGAGGAGC CAATTGAGCT CGCCGAGGCA ACCGAAACCG CCGATCCGAA TGTGGCAGAT
CAGGCGACTG ATGCGCCAGA TCCAGACGCG CCAGGCGACG GCGCAGCGGA GGGGAGCACA
ACGGTGACGG CGCAGTCCGA AGAGGTCGCA TTGGCTGATG TCGCAGTCGA TAGCACCGAT
CCGGACGCGG AGGGCGATGC CTCCTCGACG GAGTCGGCTG CGAGTGGTGC CGCTGACAAT
GGAGTGGCAA CTGATATGGC CGCCGTCGAA AACACCGGTG ATCAACTCCC CGATGCTGCC
TCTGAGGCCG TATCTGAAGC GTCACCCGAA GCGGTAGACC CCTCTGTAGA TGTGGCCGAG
GCCACCAGTG CTTTGCCGGA GACCGAGGTC ACAGCGGAAG ACGCGCCCGC AGCAGAGGCA
CCGGAAGAGA CAGTCGAGAC CGCCGCCTTG GAACAGGCGA TCGACGACGA GTCCGCTCGC
GAATCTTCTG AAGACTCGGT CCCGGCTCCT GAGCCTGAGG TGGCAGCTGT TGCAGACACA
TCAGAGCCGC CCGCTCCGGA CACGACACCT GCACCGCAGT CCCCGGTCGA GGTTGCCGAG
GCCGTTGACA CACCCGAGGT GCCATCTTCC AAGACGGACA CAATGGCTGC CGTAGAAGAG
GTGCAGCAGC CGCAGCCGCA AGACCCCGAC ACAGAGAGCC CCTCTGGCGA GGCGGCTCCC
GCGCCGCAGG CGACTTCCTC TGTCGCGGTG CTGCGCGCTG GTCGCGATGG GGTGACGCTG
GTTCAACCTG CGGCCCCAGC CGCACCAGAG CTGGTGGGCA AGGTGGCGCT CGATACGATC
AGCTACACCG AGACGGGCGA TGTTCAGCTT GCGGGACGGG CCAGGCCCGA GGCCCTGGTG
CGTGTCTACC TCGACAACAG CCCTGTGGCC GAGCTTGCCG CCGCGTCCGA TGGTCAATGG
AGCGGCAGCC TCACCTCGGT GGCGCCGGGG ATCTACACCC TGCGCCTTGA TGAGATCGAC
CCTGTTGACG GTATCGTCCT GAGCCGCCTT GAGACCCCGT TCAAACGCGA GGCTCCAGAG
GTCCTGCAGC CTGCGGTGAC GGCGGATCAG GCGCCAGATC AGGCTGCGCC TGTGGTGCGC
GCCGTGACGG TGCAGGAAGG CGATACGCTC TGGGCGATTT CCCAGCAGCG CTATGGCAGC
GGTTTTCTCT ATGTGCGGGT GTTTGAGGCC AACAAGGGCG ATATCCGCGA TCCAGACCTG
ATCTACCCTG GTCAGATCTT CACTCTGCCC GAGTAA
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| Protein sequence | MTKTSGIGAG ASLAIGTVAT VVVVGGGVFL ARGGILGEGA RSMVEQQLVA LGLAAPPAPE
VVPVKPVVTQ PQTADPETRV VEPEPTPEAT AGETVETQQD APTAEPAFVL QAPKLEIARF
EPDGSGIVAA SAQAGVEVQV LLDDEVLDTQ TVPAAGEFVS FVTIDLSDKP RLLTLLARHN
GQELASEDSF ILAPMPAPAA PEPQVDQLAA AQTDSDIAAP EEEPIELAEA TETADPNVAD
QATDAPDPDA PGDGAAEGST TVTAQSEEVA LADVAVDSTD PDAEGDASST ESAASGAADN
GVATDMAAVE NTGDQLPDAA SEAVSEASPE AVDPSVDVAE ATSALPETEV TAEDAPAAEA
PEETVETAAL EQAIDDESAR ESSEDSVPAP EPEVAAVADT SEPPAPDTTP APQSPVEVAE
AVDTPEVPSS KTDTMAAVEE VQQPQPQDPD TESPSGEAAP APQATSSVAV LRAGRDGVTL
VQPAAPAAPE LVGKVALDTI SYTETGDVQL AGRARPEALV RVYLDNSPVA ELAAASDGQW
SGSLTSVAPG IYTLRLDEID PVDGIVLSRL ETPFKREAPE VLQPAVTADQ APDQAAPVVR
AVTVQEGDTL WAISQQRYGS GFLYVRVFEA NKGDIRDPDL IYPGQIFTLP E
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