Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_0834 |
Symbol | |
ID | 4077540 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | - |
Start bp | 878016 |
End bp | 879683 |
Gene Length | 1668 bp |
Protein Length | 555 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 638006132 |
Product | amidohydrolase 3 |
Protein accession | YP_612829 |
Protein GI | 99080675 |
COG category | [R] General function prediction only |
COG ID | [COG1574] Predicted metal-dependent hydrolase with the TIM-barrel fold |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.644909 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCATCC CTCCTCAGAC CGTGATCCTG AACGGTCGCC TGATCACCTT TGACCCCAAA AGCCCCTTTG CCGAGGCGCT CGCCATCACC GACGGGCTGA TCTCTGCGGT GGGCACCACC GCCGAAATCC GCGCTCTTTC CGCGCCCTCC ACTCGCGTGA TTGACGCCGC CGGGAGCACC GTGTTGCCGG GATTTATCGA CAGCCATGTG CATCTCTTTG GCGGCTCAGT CGAACTCGCG TGCCTGGATC TCACGGGTGT TCAGGGGGAG ACAGAACTGA CCGAGGTCGT GCGCGAATGG GCCGCCAAGA ACACCGAAGA TCGGCTCGTC TTTGCGGTTC AGGCCGATTA CGCCATTCTG GGTGAAGGTA TCAAAACCAC CCGTCAGGCG CTGGATCGCG TTTTGCCCGA TCGTCCCTTT GCCATGTATG CGCCCGATCA TCACACGGTC TGGGCCAATA CCGCCGCGCT GGAGGCCGCA GGGCTTCTTC ATGGTGCAGA GGTCGAAGCG GGGGCGCAAG TGGTGATGGG CACCGATGGC CGCGCGACGG GCGAACTGCA GGAGCCTTCC GCCTATGCGC CGGTGCTGCG CATGACCCGC CACGCAGGTC GGGACATGAT GGGGCTGGTA ACGGGGGCCG ACCCGGTACC AGCAGCCACG CCCGCCGAAC GCGCGCTAGA CAAGGCAGCT TTGGAACGTG GCCTCAAACA CTGCGCCAGC CACGGCATCA CCGGGTTGCA CAATATGGAT GGCAATTTCT ATCAGCTCGA ACTGCTCTCC GAGATGGAGC GGGACGGCAC GCTCTTATGC CGTACCGAAG TACCTTTTCA CTACAAGAGC CCAGATCCGC TCGACCGGTT TTCCGAAGCG CAAGACATGC GCCAACGCTT CAACAGCGAT ATGGTCTGGT GCAATCGGGT AAAGATGTTC ATGGATGGCG TTGTTGAGAG CGGCACCGCC CTGATGCTGC GCCCCTACCC CGGCACCGAT CATATCGGCG ACGCGGTGTT TGAGCCGGAG CACTTCAACG AAGCCTGCAT CCGCGCCGAC GCCTTGGGGC TGCAGATTGC CACTCATGCG ATTGGCGATC TGGCCGTGCG CCGCACACTC GATGGCTATG AGGCTGCCCA GCGCAGCAAT GGCCAACGTG ACAGTCGCCA CCGGATCGAA CACATCGAAG TGCTGCACCC CGACGATCTG CCCCGTTTCA AGGCCCTGGG CGTCGTCGCC TCGATCCAAC CGGGGCATGC ACCCTTTGGA GGCTATTTCC CTCCATCGGG CGTGGGGGCA ATGCTGCACC CGGACCAGAT CCCGCTCGCA TACGCATGGC AGGACATCCG CAACAGCGGC GCAAAGGTCA TTTTCTCGAC CGACTGGCCC GTAATCCCCG TCGACGTGAT GCCCACGATC AAGGGCGCGG TTGCGCCGCA TTCGCTCGGT GCCCCGTGGC GAGATCAATC ACAGAGCCTG ATGGATACGC TCGCCAGCTA CACGGTCGAG AACGCATGGG TGGAATTCAA TGAGGCCCGC AAGGGCATGT TGAAACCGGG TATGATGGCA GACATCGTGG TGATGGATCA CAACCTTGAA GCCATGGATC CCCAGTTGCT CGATCAGTCC CGCGCAGCCT TTACGATCTG TGGCGGTCGC CTGACCTGGG AGGCTTGA
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Protein sequence | MTIPPQTVIL NGRLITFDPK SPFAEALAIT DGLISAVGTT AEIRALSAPS TRVIDAAGST VLPGFIDSHV HLFGGSVELA CLDLTGVQGE TELTEVVREW AAKNTEDRLV FAVQADYAIL GEGIKTTRQA LDRVLPDRPF AMYAPDHHTV WANTAALEAA GLLHGAEVEA GAQVVMGTDG RATGELQEPS AYAPVLRMTR HAGRDMMGLV TGADPVPAAT PAERALDKAA LERGLKHCAS HGITGLHNMD GNFYQLELLS EMERDGTLLC RTEVPFHYKS PDPLDRFSEA QDMRQRFNSD MVWCNRVKMF MDGVVESGTA LMLRPYPGTD HIGDAVFEPE HFNEACIRAD ALGLQIATHA IGDLAVRRTL DGYEAAQRSN GQRDSRHRIE HIEVLHPDDL PRFKALGVVA SIQPGHAPFG GYFPPSGVGA MLHPDQIPLA YAWQDIRNSG AKVIFSTDWP VIPVDVMPTI KGAVAPHSLG APWRDQSQSL MDTLASYTVE NAWVEFNEAR KGMLKPGMMA DIVVMDHNLE AMDPQLLDQS RAAFTICGGR LTWEA
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