Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_0307 |
Symbol | |
ID | 4077130 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | - |
Start bp | 312099 |
End bp | 313925 |
Gene Length | 1827 bp |
Protein Length | 608 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 638005601 |
Product | putative inner membrane protein translocase component YidC |
Protein accession | YP_612302 |
Protein GI | 99080148 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0706] Preprotein translocase subunit YidC |
TIGRFAM ID | [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain [TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.339153 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACGATC AGAACAAGAA TCTACTGCTC GCAACCGCTC TGAGTTTCCT GGTGATCCTC GGCTGGTATT TCTTCTTCCC CCCGCCGGAA GAGGCGCCTC AGCCTGCGAC TGAAGTCACT GAAACCGCGC CCCAAGGCGA TACGACCGCA CCTGCGGCCG CGCCCAGTGC CGGTGCGGCA ACCGCCGAGG TCGACGCGGC CGCCGCCGAA ACCGAAATCA CCGAAGACGT CCCGCGCCTC ACGATCGACA CCCCGCGTGT CGAGGGCTCC ATCTCTCTCA AAGGGGGCCG GATCGACGAT CTGCGGCTCA AGGACTACCG CGAGACGCTG GATGACGATT CGCCAATCGT GACGCTCTTG TCGCCTGCCG GTCAGCCCCA TGCCTACTAC GCGCTTTACG GCTGGGCGCC GGGGGCCGGT CTTGGCATCG AAGATGTGCC CACCGCCAAT ACGCTCTGGC AGGCCGAAGC GGGCGCGACC CTGACCCCAG ACACCCCGGT GACGCTCACT TGGGACAACG GCAAGGGCCT GACCTTCTCG CGCGAAGTTT CCATCGATGA GGACTATATG TTCTCGATCA CCCAGTCGGT GACCAATAGC TCCGGCGCGT CCGTCGCGCT GGCGCCCTAC GGCACCCTCG CCCGGCATGG CGAACCCGCC AACCTCGAGA ACTTCTTTGT TCTGCACGAG GGCGTTGTGG GCATGGCCGA TGGCGAGCTG TCGGAAATCG ACTATGACGA CATGACCGAT TTCGACCCCG ATCCCCGCGA CGGGTCGCGC GCGCAGGTCA ACACCGTGAC CGAGAACGGC TGGATTGGCT TTACCGGCCA CTACTGGATG TCGACGCTGA TCCCCGCCCC CGGTGAGGCC TTCCGCGCCA TCGCAAAATA CGACGAACGC CGCGACATCT ACCAGACGGA TGTGGTTCTG CCGACCGTGA CCCTCGCCGC CGGCGAGAGC ACCAGCGCGA ACACCCAGCT GTTTGCGGGC GCGAAGGAAT GGGCCACCAT CCGCGAGTAT GAGCGTGCAG GCATCGAAGG CTTCCTCGAC TCGATCGACT GGGGTTGGTT CTTCTTCTTC ACCAAGCCGA TCTTTGCCGT GCTGCACTGG CTCAATGCCG CGATCGGCAA CATGGGTGTT GCAATCATCG CGCTGACGTT CCTGTTGAAA ATCCTCGTCT TCCCGCTGGC CTATAAATCC TACGCCTCGA TGGCGCGGAT GAAGGAACTG CAGCCCGAGA TGGAAAAGCT GCGCGAACGC GCGGGCGATG ACCGTCAGAA GATGCAAAAG GAGATGATGG AGCTCTACAA GCGCGAGAAA GTCAATCCGG CCGCAGGCTG TCTGCCGATC CTGATCCAGA TCCCGATCTT CTTCTCGCTC TACAAGGTGA TCTTCGTGAC ACTCGAGCTG CGCCATGCAG CCTTCTTTGG TCCCTTCCAG GATCTCTCGG TGCCCGATCC CACCTCGCTC TTCAACCTCT TTGGCCTGCT GCCCTGGGCG GCACCGGCCC CCGACAGCCT GCTGTCGCTG GTCTTCATCG GCATCCTGCC GATCCTCCTC GGGGTCTCCA TGTGGGTACA GCAGAAACTG AACCCTGCCC CGACGGATGA AACCCAGCGC ATGATCTTTG CGTGGATGCC TTGGGTCTTC ATGTTCATGC TGGGCGGCTT TGCCTCGGGC CTCGTGGTCT ACTGGATCAC CAACAACGTG ATCACCTTCA CCCAGCAGTA TCTGATCATG CGCTCGCACG GCTATACCCC TGATGTCTTT GGCAATATCA AGTCAGGCTT CAAGAAGGAC AAAGCCGAGA AAGCCGAGAA GAAATGA
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Protein sequence | MDDQNKNLLL ATALSFLVIL GWYFFFPPPE EAPQPATEVT ETAPQGDTTA PAAAPSAGAA TAEVDAAAAE TEITEDVPRL TIDTPRVEGS ISLKGGRIDD LRLKDYRETL DDDSPIVTLL SPAGQPHAYY ALYGWAPGAG LGIEDVPTAN TLWQAEAGAT LTPDTPVTLT WDNGKGLTFS REVSIDEDYM FSITQSVTNS SGASVALAPY GTLARHGEPA NLENFFVLHE GVVGMADGEL SEIDYDDMTD FDPDPRDGSR AQVNTVTENG WIGFTGHYWM STLIPAPGEA FRAIAKYDER RDIYQTDVVL PTVTLAAGES TSANTQLFAG AKEWATIREY ERAGIEGFLD SIDWGWFFFF TKPIFAVLHW LNAAIGNMGV AIIALTFLLK ILVFPLAYKS YASMARMKEL QPEMEKLRER AGDDRQKMQK EMMELYKREK VNPAAGCLPI LIQIPIFFSL YKVIFVTLEL RHAAFFGPFQ DLSVPDPTSL FNLFGLLPWA APAPDSLLSL VFIGILPILL GVSMWVQQKL NPAPTDETQR MIFAWMPWVF MFMLGGFASG LVVYWITNNV ITFTQQYLIM RSHGYTPDVF GNIKSGFKKD KAEKAEKK
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