| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0078 |
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| Symbol | |
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| ID | 4075975 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 81035 |
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| End bp | 83170 |
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| Gene Length | 2136 bp |
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| Protein Length | 711 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 638005365 |
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| Product | polynucleotide phosphorylase/polyadenylase |
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| Protein accession | YP_612073 |
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| Protein GI | 99079919 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) |
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| TIGRFAM ID | [TIGR03591] polyribonucleotide nucleotidyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.901584 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCAACG TAACGACGAA AACAATGCAG TGGGGCGAAG AAACGCTCAC ACTGGAAACC
GGCAAGGTTG CGCGCCAGGC AGATGGCACC GTGATCGCGA CGCTCGGCGA AACCTCGGTC
ATGGCCAACG TGACCTACGC CCGCGAACAA AAGCCCGGTC AGGATTTCTT TCCGCTGACC
GTTCACTACC AGGAAAAATA CTACGCCGCC GGTAAGATTC CGGGCGGCTT TTTCAAACGT
GAAGCGCGTC CGACTGAAAA AGAGACGCTG ACTGCACGTC TGATCGACCG CCCGATCCGC
CCGCTGTTCG TTCCCGGCTT CAAAAACGAA GTTCTGGTGA TGTGCACCGT GCTGTCCCAC
GATCTGGTCA ATGACCCCGA CATCGTCGCG ATGATCGCCG CCTCCGCCGC GCTGACCATC
TCTGGCGTGC CGTTCATGGG TCCGATCGCG GGTGCGCGCG TCGGTTACGA GGATGGCGAG
TACATCCTGA ACCCGACCGT CGACGACATG CAGGACCTGC GCCTCAACCC CGAGCAGCGT
CTGGACCTTG TTGTTGCAGG CACCAAAGAT GCCGTGATGA TGGTCGAATC CGAAGCTTAC
GAGCTAACCG AAGAAGAAAT GCTCGGCGCT GTGACCTTCG CACACGAGCA AATCCAGCCG
GTCATCGATC TGATCGTCTC GCTCGCAGAA GAAACCGCAA AAGAGCCCTT CGACTTCACG
CCGCCGGATT ACTCCGACCT CTATGCTGCC GTTAAAGCAG CGGGCGAAGA GAAGATGCGC
GCAGCCTATG CGATCTCTGA CAAGCAGGAA CGTGTTGCCG CCGTTGGCGC CGCCAAAGAA
GAGATCATCG CGTCTCTGAC CGAAGAGCAG CAGGAAGACG GCAACCTCGG CTCCGCGCTG
AAAAAGCTCG AATCTGTTGT TCTGCGGGGC GACGTTGTGA AAAACGGTCG CCGCATCGAC
GGTCGTGCCC TGGATCAGGT CCGCGCGATC GAGTGCCAGA CCGGTCTTTT GCCGCGTACA
CACGGGTCTG CGCTGTTCAC CCGTGGTGAA ACGCAGGGTC TCGTGGTGAC CACGCTCGGC
ACCGGCGACG ATGAGCAGTT CATCGACGCG CTGCACGGCA ACTTCAAATC GAACTTCCTG
CTGCACTACA ACTTCCCGCC CTACTCGGTT GGTGAAGTGG GCCGCGTGGG CTCTCCGGGT
CGTCGTGAAA TCGGCCACGG CAAGCTCGCA TGGCGCGCGC TGCAGGCGGT TCTGCCGGCT
CCGACCGACT TCCCCTACAC CATCCGCGTG GTCTCTGAGA TCACCGAATC GAACGGCTCT
TCCTCCATGG CTTCGGTCTG TGGTGGCTCG CTCTCGATGA TGGACGCAGG TGTGCCGCTG
AAAGCACCGG TTGCCGGTGT CGCCATGGGC CTCGTGCTCG AAGAGGACGG CTCCTACGGC
ATCCTGACCG ATATTCTTGG CGACGAGGAT CACCTCGGCG ACATGGACTT TAAGGTTGCG
GGTACCGAAG CAGGCATCAC CTCCTTGCAG ATGGACATCA AGGTTGCAGG CATCACGCCT
GAAATCATGA AAAACGCGCT GGCTCAGGCC AAAGCGGGCC GCCTGCACAT CCTTGGTGAG
ATGGCCAAAT CGCTGACCGA AGCCTCCGAG TTCTCGCAGC ACGCACCGCG CATCGAGACC
ATGCAGGTTC CGACCGACAA GATCCGTGAA GTGATCGGTT CCGGCGGTAA GGTCATCCGC
GAGATCGTCG AAGTCTCCGG TGCCAAGGTC GACATCAACG ACGACGGCGT GATCAAGATT
GCCTCCGCCA ACGGCGAAGC GATCCAGAAG GCCTATGACA TGATCCACGC GATCGTGGCA
GAGCCGGAAG AAGGCGCGGT CTACACCGGT AAAGTTGTGA AGATCGTCGA CTTCGGCGCC
TTCGTGAACT TCTTCGGCAA GCGCGACGGT CTGGTGCATG TGTCCCAGAT CGAAAACCGC
CGCCTGAACC ACCCCAGCGA CGTGCTGAAG GAAGGTCAGG AAGTGAAAGT GAAGCTCCTG
GGCTTTGACG ATCGCGGCAA GGTACGCCTG TCCATGAAAG TCGTGGATCA GGAAACTGGC
GAAGAGATCG TCGCAGAGAA GAAAGAAGCA GAGTAA
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| Protein sequence | MFNVTTKTMQ WGEETLTLET GKVARQADGT VIATLGETSV MANVTYAREQ KPGQDFFPLT
VHYQEKYYAA GKIPGGFFKR EARPTEKETL TARLIDRPIR PLFVPGFKNE VLVMCTVLSH
DLVNDPDIVA MIAASAALTI SGVPFMGPIA GARVGYEDGE YILNPTVDDM QDLRLNPEQR
LDLVVAGTKD AVMMVESEAY ELTEEEMLGA VTFAHEQIQP VIDLIVSLAE ETAKEPFDFT
PPDYSDLYAA VKAAGEEKMR AAYAISDKQE RVAAVGAAKE EIIASLTEEQ QEDGNLGSAL
KKLESVVLRG DVVKNGRRID GRALDQVRAI ECQTGLLPRT HGSALFTRGE TQGLVVTTLG
TGDDEQFIDA LHGNFKSNFL LHYNFPPYSV GEVGRVGSPG RREIGHGKLA WRALQAVLPA
PTDFPYTIRV VSEITESNGS SSMASVCGGS LSMMDAGVPL KAPVAGVAMG LVLEEDGSYG
ILTDILGDED HLGDMDFKVA GTEAGITSLQ MDIKVAGITP EIMKNALAQA KAGRLHILGE
MAKSLTEASE FSQHAPRIET MQVPTDKIRE VIGSGGKVIR EIVEVSGAKV DINDDGVIKI
ASANGEAIQK AYDMIHAIVA EPEEGAVYTG KVVKIVDFGA FVNFFGKRDG LVHVSQIENR
RLNHPSDVLK EGQEVKVKLL GFDDRGKVRL SMKVVDQETG EEIVAEKKEA E
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