Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_0012 |
Symbol | |
ID | 4078675 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | - |
Start bp | 13332 |
End bp | 14210 |
Gene Length | 879 bp |
Protein Length | 292 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 638005299 |
Product | ABC transporter, permease protein |
Protein accession | YP_612007 |
Protein GI | 99079853 |
COG category | [G] Carbohydrate transport and metabolism [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1682] ABC-type polysaccharide/polyol phosphate export systems, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.0966551 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.591575 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATCAGC AAGAAATCCA TGTGAGAATA AGCCACTTGC TGCTGAATTC TGAGGCCATG TTTCGATATC GCACCGATAA GTCACCGCTG TCCCGCGCCA TCACGCTGAG TGAAGTTGTC TTTCATTCAG TGGTGCGTAG CGTGCGTTCG AAGCACAACA ACGCCTTTAT GGCGCTCGGG ATCAACATCA TCCAGTCCGT GCTGTTCGTG ATGTTTTTCT ACTTCATGTT CACGGTCATG GGCATCAAGG GTGCCGCCAT CCGGGGCGAC TTTCTACTCT ACATGATGTC CGGCGTGTTC CTGTTCATGA CCCACACCAA AACCGTGGGC GCCGTGGTAG GTGCCGAAGG GGCCTCGAGC CCCATGATGC AGCACGCCCC GATGAACACA ACCATCGCAA TCCTGTCCGC GGCCCTTGGG GCGCTTTATC TGCAGGTGTT GTCGATGTTG ATCATTCTCT TTGCGTATCA TGTCGCATTT ACCCCGATCC ACATCGAGGA GCCGGTCCCC GCCTTTGGCA TGCTGCTATT GGCCTGGGCC TCCGGGGCTG CAATCGGCCT GGTACTCTAT GTTCTGAAAC CCTGGATGCC AAGTGCGATC GGGATCATTT CAACGATTTA CCAGCGCTCC AACATGTTGT TTTCAGGCAA AATGGTGCTG GCGAACACCC TGCCGGGCTA CATGCTGCCA ATGTTCATCT GGAACCCTCT GTTCCATACG ATCGATCAGG CACGTGGCTA TATCTTCATC AACTATAATC CCCATGTCAC CTGGTGGGAG TACACCATGT GGCTTGCGCT TATCTTCCTC GTCTTGGGGC TGATGGGAGA GTTTTACACA AGACGCGCGG TCTCGCTCAG CTGGGGTGCA CGGCGCTAA
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Protein sequence | MDQQEIHVRI SHLLLNSEAM FRYRTDKSPL SRAITLSEVV FHSVVRSVRS KHNNAFMALG INIIQSVLFV MFFYFMFTVM GIKGAAIRGD FLLYMMSGVF LFMTHTKTVG AVVGAEGASS PMMQHAPMNT TIAILSAALG ALYLQVLSML IILFAYHVAF TPIHIEEPVP AFGMLLLAWA SGAAIGLVLY VLKPWMPSAI GIISTIYQRS NMLFSGKMVL ANTLPGYMLP MFIWNPLFHT IDQARGYIFI NYNPHVTWWE YTMWLALIFL VLGLMGEFYT RRAVSLSWGA RR
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