| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3143 |
|---|
| Symbol | |
|---|
| ID | 4075015 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008043 |
|---|
| Strand | - |
|---|
| Start bp | 121684 |
|---|
| End bp | 123258 |
|---|
| Gene Length | 1575 bp |
|---|
| Protein Length | 524 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 638004646 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_611379 |
|---|
| Protein GI | 99078121 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0573017 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCCGTC TGTTATGCAC GGCTGCCTGT GCAACCGCCC TTGTGTCCCA GCTCCCTGCC
TCCGCCGTGG CCAAGGAGTT CTCTTGGGCC GTGACCACCG ATCCGCAGAC CATGGATCCC
CATGCGGTGA ATTCCTCGCC CGTTCTGGGC TTTTTGAACA ACGTCTACGA AGGTCTTGTG
CGGCGCGGCA AGGACATGAG CATCGAGCCT GCGCTGGCCA CCGGCTGGGA GCCGATTGGC
GAGGGCGAGG GCTGGCGGTT CTTCCTGCGC GAGGGCGTGA CGTTTCAGGA CGGCAGCGCC
TTTGATGCGG AGGATGTGAT CTTTTCCTAT GAGCGGGCCT CGAGCCCTGA ATCCGACACC
GCAAGCTGGT TTGCGCCCGT GTCGGATGTG GTCAAGGTCG ATGACTATAC CGTTGATTTT
CTGACGAATT CTCCAAACCC GATTTTTCCG GACAGCATCG CGAACTGGAT GATCATGGAC
AGCGGCTGGG CCGAGGCCAA TGCCGCCAGC CGCCCCGACA AGGAGAGCGG CAACTACGCG
ACGCTCAACG CCAATGGCAC CGGCGCGTTC CGCGTGACCG CACGCGAGCC TGGCCTGCGC
ACCGTGCTGG AGCCCTATGA AGGCTGGTGG GGCGAGGCCG AGCACAACAT CACCCGCGCC
GAGATGACTC CGATCCAGAA CCCGGCCACC GCCCTTGCGG CGCTGCTCTC GGGGGACGTG
GACATGATCA ATCCGGTGCC AATTCAGGAC GTCGAGCGCC TGCAGGGCAA CCCGGATGTG
AATGTGGTGC AGGGCATCGA GGCCCGCGTC ATCATGCTGG GCTTTGGCCA TCAGGCGGAG
GCGTTGAAAT ACTCTGCCGA GACTGAAGAC AACCCCTTTG GGGACCCGCG CGTGCGCAAG
GCCGTGGCCC ATGCGGTCAA TGTGCCTGCA ATCCTGCGCA CCATCATGCG TGGCAACGCC
GAGCCGGTGA ACCAGCTGGT GAGCAGCGCC ATGCGCGGCT ACTCCGAGGC GCTGCCGGGC
CAGATGGCCT ATGACCCGGA GGCCGCAAAG GCGCTCCTGG CAGAGGCAGG CTATCCCGAC
GGGTTTTCCT TTGGTCTGAA GTGCCCCAAC AACCGCTACC TCAATGATGA GGCGGTCTGT
CAGGCTGTGA CGGCCATGCT GGCGCAGGTG GGGCTCAAGG CGACTTTGGA TGCGATGCCG
GTGCAGAACT ACTGGCCGGA ACTGCGGGCC GGGAACTTTG ACATGTATCT TCTGGGCTGG
TCGCCCGGCA CCTTTGATGC GGAGCATCCA ATCCGCTTCC TGGCGGCGAC CCCGAACACG
GAGAAGAAGC TCGGTTCCTG GAACTTTGGC GGCTATTCCA ACGCGCGCGT GGACGCGCTG
TTGCCTAAGA TCCAGTCCGA GATCGACGAT TCGACCCGGC AGGGGATGCT TGATGAGGTG
GCGCAGGTCT TGCAGGACGA GACCGCCTAT GTACCGCTCT ACGTGCAACC GCTGGTCTGG
GGGACCCGCA GCAACGTCAC TTTGACCCAA CGGCCAGATA ACTTCTTTAT CCTGCGCTGG
GTCTCCGTTA AATAA
|
|---|
| Protein sequence | MLRLLCTAAC ATALVSQLPA SAVAKEFSWA VTTDPQTMDP HAVNSSPVLG FLNNVYEGLV
RRGKDMSIEP ALATGWEPIG EGEGWRFFLR EGVTFQDGSA FDAEDVIFSY ERASSPESDT
ASWFAPVSDV VKVDDYTVDF LTNSPNPIFP DSIANWMIMD SGWAEANAAS RPDKESGNYA
TLNANGTGAF RVTAREPGLR TVLEPYEGWW GEAEHNITRA EMTPIQNPAT ALAALLSGDV
DMINPVPIQD VERLQGNPDV NVVQGIEARV IMLGFGHQAE ALKYSAETED NPFGDPRVRK
AVAHAVNVPA ILRTIMRGNA EPVNQLVSSA MRGYSEALPG QMAYDPEAAK ALLAEAGYPD
GFSFGLKCPN NRYLNDEAVC QAVTAMLAQV GLKATLDAMP VQNYWPELRA GNFDMYLLGW
SPGTFDAEHP IRFLAATPNT EKKLGSWNFG GYSNARVDAL LPKIQSEIDD STRQGMLDEV
AQVLQDETAY VPLYVQPLVW GTRSNVTLTQ RPDNFFILRW VSVK
|
|---|
| |