| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_5729 |
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| Symbol | kpsD |
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| ID | 4042593 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007974 |
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| Strand | - |
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| Start bp | 2488303 |
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| End bp | 2490123 |
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| Gene Length | 1821 bp |
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| Protein Length | 606 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637981148 |
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| Product | polysialic acid transport protein KpsD |
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| Protein accession | YP_587857 |
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| Protein GI | 94314648 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1596] Periplasmic protein involved in polysaccharide export |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACGAA TTGCCTGCTG CCTCGTCGCC GCATCTCTGC TCTTCTCATG GGCAGTGCAC
GCGCAGACGC CCAACGTTCC GCTATCCATG CTACCCAACG CACTGCTCGG ACTAACGTCC
AGCTCGGATA GCAGTCCCTC GACTGACGTC GCCACTGGCC AAGGCGCGGC AGCACCTGCC
TGGCAAAGCG GCCAACCGAG TATCTCTGGC CTGCAATCTC CGATGATTAC GGGCGGCACG
CCTTTGCCGG GTACCGGGCA GATCCAGCCG CCGTTGCCGA ATATCGGTGC GCAGGCATAT
ATCCCTGCGC AGCGGCTGGG CGACTACGAC GCCAACCAGA AGAGCGAGGT CTTCGGCACT
CAGCTATTCA CCGGCGCATT CGCCCGCAGC GCGCCATCCA CCTTCAATCC TGACTACGCT
GTTGCCATCG GTGACGGCGT GCGCGTCAGG ATCTGGGGCG GGTTCGATTT TGACAGCGTG
CTTACTGTCG ATTCGCAGGG CATGATCTTC CTGCCTCATT GTGGACCAAT GCGTGTAGCT
GGCATTCACA ACCGCGACCT GCAAGCGGCG GTTACCGGTG CGCTGCGCAA GGTCTTCAGT
AGTAATGTTT CCATCTACGC GAGTCTTGCC TCGGCGCAGC CCGTTCGCGT GCTGGTCTCC
GGCTTCGTCC GCCATCCCGG CATGTACGAA GGAACGGGGA ACGACAATGT GCTGCGCTAT
CTGGACATGG CCGGTGGCGT AGATCCGGAC CGGGGTTCCT TCCTGGATAT CCAGGTCAAG
CGCGGGGCCA CAGTACGCTA CAACGTCGAT CTCTATCGCT TCTTGTTGAA TGGCGACCTG
CCGAGTACGC CCCTGACAGA TGGCGACGTG ATCTTCGTTG GTCAGCGGAA GAACACAGTG
ATGGTCGGCG GCCTGGCAGC GAGCGCCAGG CGTTTTGAAT TCAACGGTAC CACCACGCTG
GCCCAGATCG CAGCCGCTGC GCGGCCGGAC GCCACCTCTA CCAACGTGCG CGTCACGCGT
GGATCGGGAA CGGTGCAGCA CGTTGAGTAC TATCCGCTAA GCAAGACACC AGACGTCACC
CTGATGAATG GCGATCTCGT CGAGTTCACA GCCGACAAGC GGCCCGGCAC GATTACGGTT
CGGGTGGAAG GCGAGCACCT GGGTCCACAG GAGTATGTCG TGCCTTATGG CACCAAGCTG
GGCGACCTAC TGGGTCGCGT GGAGATGACA TCCAACTCGC TGCCGGAGAG CACGCAACTC
TTTCGTCAAA GCGTGAAGGA TCGGCAGGCA AAGATGCTCG ATACCTCGCT CACGCAGTTG
CAAAACAGCG TGCTTACAGC ACGCTCCGGA ACTAACGAGG AATCCCAGCT GCGCCAGCGC
GAGGCTGCCC TGGTTCTGCA ATGGGTGGAC CGCGCGCGCC ACATTGATCC CTCCGGTCAA
GCAGTCATCG GCCATGGCGA GGAACGCAGC GCCCTGCTGC TGGAGAACGG TGACCGACTG
AGGATCCCCA CTCGCAACGA TCTCGTGTTG ATTGGCGGTG AAGTCCTGTT CCCGAACTCG
TTCGTGTTCA AACCTGGTGC CAATGTCCAG CGTTACATTC AGCAGGCAGG TGGATACACG
CAGAACGCTG ACAGCTCACG CGTCATCATC GCCCATCTTG ACGGTACGTT TGTCGATGCG
CGCCAGGACG ATACCGTGAT GCCGGGAGAC CAGATCATGA TCCTGCCCAA GGTGGACTTC
AAGACGATGC AGTTTGCCAA GGACGTTTTT TCCATTCTCT ACCAGATCGC CATCGCCGCG
AAGGTGGCAA TAGGTCTCTG A
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| Protein sequence | MKRIACCLVA ASLLFSWAVH AQTPNVPLSM LPNALLGLTS SSDSSPSTDV ATGQGAAAPA
WQSGQPSISG LQSPMITGGT PLPGTGQIQP PLPNIGAQAY IPAQRLGDYD ANQKSEVFGT
QLFTGAFARS APSTFNPDYA VAIGDGVRVR IWGGFDFDSV LTVDSQGMIF LPHCGPMRVA
GIHNRDLQAA VTGALRKVFS SNVSIYASLA SAQPVRVLVS GFVRHPGMYE GTGNDNVLRY
LDMAGGVDPD RGSFLDIQVK RGATVRYNVD LYRFLLNGDL PSTPLTDGDV IFVGQRKNTV
MVGGLAASAR RFEFNGTTTL AQIAAAARPD ATSTNVRVTR GSGTVQHVEY YPLSKTPDVT
LMNGDLVEFT ADKRPGTITV RVEGEHLGPQ EYVVPYGTKL GDLLGRVEMT SNSLPESTQL
FRQSVKDRQA KMLDTSLTQL QNSVLTARSG TNEESQLRQR EAALVLQWVD RARHIDPSGQ
AVIGHGEERS ALLLENGDRL RIPTRNDLVL IGGEVLFPNS FVFKPGANVQ RYIQQAGGYT
QNADSSRVII AHLDGTFVDA RQDDTVMPGD QIMILPKVDF KTMQFAKDVF SILYQIAIAA
KVAIGL
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